Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 AC073648.6-201ENST00000641589 218 ntBASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHB3Q9Y5E6 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHB3Q9Y5E6 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 UBE2SP1-201ENST00000450587 669 ntBASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDHB3Q9Y5E6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 PNMA6B-201ENST00000538162 1200 ntBASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHB3Q9Y5E6 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 AC092368.3-202ENST00000574180 1591 ntBASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 KRT17P3-201ENST00000420566 1262 ntBASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
PCDHB3Q9Y5E6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
PCDHB3Q9Y5E6 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms