Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 AC005332.1-201ENST00000577698 1310 ntBASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
ZC3H4Q9UPT8 ANKRD20A18P-201ENST00000359341 492 ntBASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 AP000692.2-201ENST00000608391 879 ntBASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
ZC3H4Q9UPT8 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 HLA-G-202ENST00000376815 851 ntBASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 HLA-G-203ENST00000376818 1127 ntBASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 AL671277.2-201ENST00000458060 996 ntBASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 CYGB-204ENST00000589342 815 ntTSL 3 BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 AC141257.4-201ENST00000634557 245 ntBASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 AC136944.6-201ENST00000634818 245 ntBASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
ZC3H4Q9UPT8 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC24.16■■□□□ 1.46
ZC3H4Q9UPT8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 AL512604.3-201ENST00000569583 964 ntBASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 AC011558.1-201ENST00000623459 338 ntBASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 AC096733.2-201ENST00000609937 1394 ntBASIC24.15■■□□□ 1.46
ZC3H4Q9UPT8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 AC008622.2-201ENST00000617006 1229 ntBASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 AC131212.4-201ENST00000623606 975 ntBASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 KRT8P36-201ENST00000489121 1440 ntBASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.14■■□□□ 1.46
ZC3H4Q9UPT8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
ZC3H4Q9UPT8 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC24.14■■□□□ 1.45
ZC3H4Q9UPT8 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
ZC3H4Q9UPT8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
ZC3H4Q9UPT8 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
ZC3H4Q9UPT8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
ZC3H4Q9UPT8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms