Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SCN3AQ9NY46 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 AFG3L1P-217ENST00000557444 2447 ntBASIC18.87■□□□□ 0.61
SCN3AQ9NY46 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.87■□□□□ 0.61
SCN3AQ9NY46 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 MTDHP1-201ENST00000605323 784 ntBASIC18.86■□□□□ 0.61
SCN3AQ9NY46 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SCN3AQ9NY46 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 C1QBPP2-201ENST00000528754 825 ntBASIC18.85■□□□□ 0.61
SCN3AQ9NY46 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.85■□□□□ 0.61
SCN3AQ9NY46 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.85■□□□□ 0.61
SCN3AQ9NY46 PRORSD1P-201ENST00000295112 541 ntBASIC18.84■□□□□ 0.61
SCN3AQ9NY46 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.84■□□□□ 0.61
SCN3AQ9NY46 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SCN3AQ9NY46 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SCN3AQ9NY46 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms