Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.65■□□□□ 0.74
MKS1Q9NXB0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MKS1Q9NXB0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.64■□□□□ 0.74
MKS1Q9NXB0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
MKS1Q9NXB0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
MKS1Q9NXB0 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
MKS1Q9NXB0 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.64■□□□□ 0.73
MKS1Q9NXB0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
MKS1Q9NXB0 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 AC005837.3-201ENST00000612163 286 ntBASIC19.63■□□□□ 0.73
MKS1Q9NXB0 AC100791.3-201ENST00000617619 330 ntBASIC19.63■□□□□ 0.73
MKS1Q9NXB0 AC010536.3-201ENST00000620306 533 ntBASIC19.63■□□□□ 0.73
MKS1Q9NXB0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.63■□□□□ 0.73
MKS1Q9NXB0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 AC016405.3-201ENST00000607710 860 ntBASIC19.62■□□□□ 0.73
MKS1Q9NXB0 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MKS1Q9NXB0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
MKS1Q9NXB0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms