Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLN6Q9NWW5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CLN6Q9NWW5 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 AL031432.3-201ENST00000607698 485 ntBASIC18.12■□□□□ 0.49
CLN6Q9NWW5 AC110285.6-201ENST00000617652 491 ntBASIC18.12■□□□□ 0.49
CLN6Q9NWW5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 AC093503.3-201ENST00000624917 2352 ntBASIC18.12■□□□□ 0.49
CLN6Q9NWW5 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.12■□□□□ 0.49
CLN6Q9NWW5 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.11■□□□□ 0.49
CLN6Q9NWW5 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.11■□□□□ 0.49
CLN6Q9NWW5 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLN6Q9NWW5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 FAM21FP-204ENST00000608637 956 ntBASIC18.1■□□□□ 0.49
CLN6Q9NWW5 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CLN6Q9NWW5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLN6Q9NWW5 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLN6Q9NWW5 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms