Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SMC4Q9NTJ3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SMC4Q9NTJ3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SMC4Q9NTJ3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 GOLGA2P11-201ENST00000562660 1621 ntBASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 BID-204ENST00000399767 2129 ntTSL 2 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC25.51■■□□□ 1.67
SMC4Q9NTJ3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 SOX15-203ENST00000570788 1093 ntBASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 AC124283.5-201ENST00000624661 1809 ntBASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SMC4Q9NTJ3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 PHGDH-210ENST00000641115 1638 ntBASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 OR2A1-AS1-207ENST00000486094 819 ntBASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 RNA5SP413-201ENST00000516373 109 ntBASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC25.49■■□□□ 1.67
SMC4Q9NTJ3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC25.48■■□□□ 1.67
SMC4Q9NTJ3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms