Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 AL137060.1-201ENST00000618151 2648 ntBASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 AL355075.4-201ENST00000554988 638 ntBASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC3Q9BQI4 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 AC087499.1-201ENST00000418141 1075 ntBASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 KRT16P5-201ENST00000455284 522 ntBASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 AC133561.5-201ENST00000635547 218 ntBASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 NBPF21P-201ENST00000425093 1451 ntBASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC3Q9BQI4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 HTR7P1-201ENST00000538670 1336 ntBASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC3Q9BQI4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CCDC3Q9BQI4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
CCDC3Q9BQI4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC3Q9BQI4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC3Q9BQI4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC3Q9BQI4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC3Q9BQI4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC3Q9BQI4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC3Q9BQI4 MIR1224-201ENST00000408193 85 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms