Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CDX2Q99626 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CDX2Q99626 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CDX2Q99626 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDX2Q99626 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CDX2Q99626 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
CDX2Q99626 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDX2Q99626 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDX2Q99626 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CDX2Q99626 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDX2Q99626 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.97■□□□□ 0.95
CDX2Q99626 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.97■□□□□ 0.95
CDX2Q99626 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.97■□□□□ 0.95
CDX2Q99626 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.97■□□□□ 0.95
CDX2Q99626 AL353719.1-201ENST00000566847 864 ntBASIC20.97■□□□□ 0.95
CDX2Q99626 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
CDX2Q99626 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDX2Q99626 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CDX2Q99626 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CDX2Q99626 LINC01311-201ENST00000565162 1445 ntBASIC20.96■□□□□ 0.95
CDX2Q99626 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.96■□□□□ 0.95
CDX2Q99626 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CDX2Q99626 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.96■□□□□ 0.95
CDX2Q99626 AC004951.3-201ENST00000418645 1148 ntBASIC20.96■□□□□ 0.95
CDX2Q99626 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.96■□□□□ 0.95
CDX2Q99626 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.96■□□□□ 0.95
CDX2Q99626 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.96■□□□□ 0.95
CDX2Q99626 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.96■□□□□ 0.95
CDX2Q99626 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
CDX2Q99626 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CDX2Q99626 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.96■□□□□ 0.95
CDX2Q99626 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CDX2Q99626 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CDX2Q99626 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CDX2Q99626 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.95■□□□□ 0.94
CDX2Q99626 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.95■□□□□ 0.94
CDX2Q99626 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.95■□□□□ 0.94
CDX2Q99626 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.95■□□□□ 0.94
CDX2Q99626 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CDX2Q99626 AC104692.2-201ENST00000603054 253 ntBASIC20.95■□□□□ 0.94
CDX2Q99626 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.95■□□□□ 0.94
CDX2Q99626 AL031008.1-201ENST00000619963 541 ntBASIC20.95■□□□□ 0.94
CDX2Q99626 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CDX2Q99626 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CDX2Q99626 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.94■□□□□ 0.94
CDX2Q99626 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CDX2Q99626 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
CDX2Q99626 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.94■□□□□ 0.94
CDX2Q99626 EMBP1-201ENST00000458200 901 ntBASIC20.94■□□□□ 0.94
CDX2Q99626 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.94■□□□□ 0.94
CDX2Q99626 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.94■□□□□ 0.94
CDX2Q99626 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CDX2Q99626 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CDX2Q99626 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CDX2Q99626 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
CDX2Q99626 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CDX2Q99626 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDX2Q99626 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDX2Q99626 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CDX2Q99626 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDX2Q99626 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CDX2Q99626 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
CDX2Q99626 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.93■□□□□ 0.94
CDX2Q99626 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.93■□□□□ 0.94
CDX2Q99626 IFNL4P1-201ENST00000607083 540 ntBASIC20.93■□□□□ 0.94
CDX2Q99626 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CDX2Q99626 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
CDX2Q99626 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CDX2Q99626 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CDX2Q99626 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.92■□□□□ 0.94
CDX2Q99626 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.92■□□□□ 0.94
CDX2Q99626 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CDX2Q99626 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDX2Q99626 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.92■□□□□ 0.94
CDX2Q99626 YBX1P10-201ENST00000444752 975 ntBASIC20.92■□□□□ 0.94
CDX2Q99626 AL160237.2-201ENST00000556165 472 ntBASIC20.92■□□□□ 0.94
CDX2Q99626 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
CDX2Q99626 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms