Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLIP3Q96DZ5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 AC008550.1-201ENST00000511500 884 ntBASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLIP3Q96DZ5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.12■□□□□ 0.65
CLIP3Q96DZ5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 AC026471.1-201ENST00000564629 3026 ntBASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLIP3Q96DZ5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLIP3Q96DZ5 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms