Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 AC105020.6-201ENST00000621523 1217 ntBASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLHC1Q8NHS4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 BID-214ENST00000617586 542 ntTSL 5 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLHC1Q8NHS4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 KRT18P68-201ENST00000392293 1000 ntBASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLHC1Q8NHS4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 KRT8P17-201ENST00000453110 1448 ntBASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 AC100791.3-201ENST00000617619 330 ntBASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLHC1Q8NHS4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 CYP2T3P-201ENST00000601990 817 ntBASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 AC069236.1-201ENST00000604339 616 ntBASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 TREX1-205ENST00000625293 1783 ntBASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLHC1Q8NHS4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.02■□□□□ 0.64
CLHC1Q8NHS4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLHC1Q8NHS4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms