Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.67■□□□□ 0.9
NPAS3Q8IXF0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 ARMC10P1-201ENST00000313754 855 ntBASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 AL590326.2-201ENST00000625139 305 ntBASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPAS3Q8IXF0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 KRT18P57-201ENST00000443599 1254 ntBASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 PLK5-205ENST00000642079 1969 ntBASIC20.65■□□□□ 0.9
NPAS3Q8IXF0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPAS3Q8IXF0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 KRT18P22-201ENST00000402024 1347 ntBASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 TERF1P1-201ENST00000311003 1181 ntBASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 C1QL1P1-201ENST00000568105 661 ntBASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
NPAS3Q8IXF0 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 FEM1AP4-201ENST00000443167 1987 ntBASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 AP006587.1-201ENST00000534129 1502 ntBASIC20.62■□□□□ 0.89
NPAS3Q8IXF0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPAS3Q8IXF0 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPAS3Q8IXF0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.61■□□□□ 0.89
NPAS3Q8IXF0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPAS3Q8IXF0 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPAS3Q8IXF0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPAS3Q8IXF0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NPAS3Q8IXF0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms