Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 BX119927.1-201ENST00000636596 1552 ntBASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 AC113410.3-201ENST00000623366 203 ntBASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 AL512408.1-201ENST00000569378 2000 ntBASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 FEM1AP1-201ENST00000431297 1995 ntBASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.16■■□□□ 1.14
CCDC60Q8IWA6 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 AL135905.2-201ENST00000584934 1404 ntBASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 TSPY7P-201ENST00000431358 1114 ntBASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 AC018553.1-201ENST00000616682 1458 ntBASIC22.15■■□□□ 1.14
CCDC60Q8IWA6 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 HTR7P1-201ENST00000538670 1336 ntBASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.14■■□□□ 1.14
CCDC60Q8IWA6 TFP1-202ENST00000475455 1573 ntBASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.14■■□□□ 1.13
CCDC60Q8IWA6 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 PHGDH-210ENST00000641115 1638 ntBASIC22.13■■□□□ 1.13
CCDC60Q8IWA6 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 AC092667.1-201ENST00000434301 2586 ntBASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC60Q8IWA6 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC60Q8IWA6 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms