Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 KRT8P17-201ENST00000453110 1448 ntBASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 MYC-209ENST00000641252 345 ntBASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 AFG3L1P-217ENST00000557444 2447 ntBASIC19.09■□□□□ 0.65
TRIM40Q6P9F5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
TRIM40Q6P9F5 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM40Q6P9F5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM40Q6P9F5 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 BX119927.1-201ENST00000636596 1552 ntBASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.06■□□□□ 0.64
TRIM40Q6P9F5 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 AL390719.1-204ENST00000412397 1219 ntBASIC19.05■□□□□ 0.64
TRIM40Q6P9F5 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms