Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.72■□□□□ 0.43
CCDC58Q4VC31 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 AC007322.3-201ENST00000426526 701 ntBASIC17.72■□□□□ 0.43
CCDC58Q4VC31 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 KRT18P20-201ENST00000548986 1279 ntBASIC17.72■□□□□ 0.43
CCDC58Q4VC31 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC58Q4VC31 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 IRS3P-201ENST00000223076 1006 ntBASIC17.71■□□□□ 0.43
CCDC58Q4VC31 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.71■□□□□ 0.43
CCDC58Q4VC31 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 AC091799.1-201ENST00000422823 811 ntBASIC17.71■□□□□ 0.43
CCDC58Q4VC31 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 CCDC92B-201ENST00000575506 885 ntBASIC17.71■□□□□ 0.43
CCDC58Q4VC31 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 AL032819.2-201ENST00000624543 2162 ntBASIC17.71■□□□□ 0.43
CCDC58Q4VC31 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC58Q4VC31 TREX1-205ENST00000625293 1783 ntBASIC17.71■□□□□ 0.43
CCDC58Q4VC31 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC58Q4VC31 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC58Q4VC31 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
CCDC58Q4VC31 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 SLC7A5P2-201ENST00000553010 536 ntBASIC17.7■□□□□ 0.42
CCDC58Q4VC31 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC58Q4VC31 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 AC008406.3-201ENST00000620001 1374 ntBASIC17.69■□□□□ 0.42
CCDC58Q4VC31 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC58Q4VC31 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms