Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 AC069148.1-201ENST00000608741 768 ntBASIC21.23■□□□□ 0.99
CHD9Q3L8U1 AL023803.3-201ENST00000615559 522 ntBASIC21.23■□□□□ 0.99
CHD9Q3L8U1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CHD9Q3L8U1 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 RCC2P6-201ENST00000526625 1557 ntBASIC21.22■□□□□ 0.99
CHD9Q3L8U1 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 IER3-202ENST00000376377 1350 ntBASIC21.22■□□□□ 0.99
CHD9Q3L8U1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 COX11P1-201ENST00000489116 835 ntBASIC21.22■□□□□ 0.99
CHD9Q3L8U1 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.22■□□□□ 0.99
CHD9Q3L8U1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHD9Q3L8U1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 AC083849.1-201ENST00000615227 514 ntBASIC21.21■□□□□ 0.99
CHD9Q3L8U1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 AC128688.1-201ENST00000487626 519 ntBASIC21.21■□□□□ 0.99
CHD9Q3L8U1 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHD9Q3L8U1 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CHD9Q3L8U1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 AC004263.2-201ENST00000617183 678 ntBASIC21.2■□□□□ 0.98
CHD9Q3L8U1 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHD9Q3L8U1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 SLC25A1P2-201ENST00000430693 912 ntBASIC21.19■□□□□ 0.98
CHD9Q3L8U1 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 CCR12P-201ENST00000446203 998 ntBASIC21.19■□□□□ 0.98
CHD9Q3L8U1 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 AC092338.2-201ENST00000568827 1415 ntBASIC21.19■□□□□ 0.98
CHD9Q3L8U1 AC096733.2-201ENST00000609937 1394 ntBASIC21.19■□□□□ 0.98
CHD9Q3L8U1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 FDX1P1-201ENST00000449115 551 ntBASIC21.19■□□□□ 0.98
CHD9Q3L8U1 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
CHD9Q3L8U1 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHD9Q3L8U1 AC023511.2-201ENST00000618803 211 ntBASIC21.18■□□□□ 0.98
CHD9Q3L8U1 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms