Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16■□□□□ 0.15
CX3CL1P78423 C2orf69P4-201ENST00000565394 541 ntBASIC16■□□□□ 0.15
CX3CL1P78423 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CX3CL1P78423 BRWD1-AS2-201ENST00000603064 1028 ntBASIC16■□□□□ 0.15
CX3CL1P78423 AL109923.1-201ENST00000618799 583 ntBASIC16■□□□□ 0.15
CX3CL1P78423 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16■□□□□ 0.15
CX3CL1P78423 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16■□□□□ 0.15
CX3CL1P78423 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 AL162377.1-201ENST00000618844 1793 ntBASIC16■□□□□ 0.15
CX3CL1P78423 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CX3CL1P78423 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
CX3CL1P78423 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.99■□□□□ 0.15
CX3CL1P78423 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.99■□□□□ 0.15
CX3CL1P78423 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
CX3CL1P78423 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CX3CL1P78423 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CX3CL1P78423 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC15.99■□□□□ 0.15
CX3CL1P78423 SERPINH1P1-201ENST00000419794 1249 ntBASIC15.99■□□□□ 0.15
CX3CL1P78423 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC15.99■□□□□ 0.15
CX3CL1P78423 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC15.99■□□□□ 0.15
CX3CL1P78423 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CX3CL1P78423 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CX3CL1P78423 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.98■□□□□ 0.15
CX3CL1P78423 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
CX3CL1P78423 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC15.98■□□□□ 0.15
CX3CL1P78423 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 MIR4758-201ENST00000577688 71 ntBASIC15.98■□□□□ 0.15
CX3CL1P78423 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC15.98■□□□□ 0.15
CX3CL1P78423 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.98■□□□□ 0.15
CX3CL1P78423 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.98■□□□□ 0.15
CX3CL1P78423 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC15.98■□□□□ 0.15
CX3CL1P78423 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CX3CL1P78423 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CX3CL1P78423 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CX3CL1P78423 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CX3CL1P78423 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC15.97■□□□□ 0.15
CX3CL1P78423 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CX3CL1P78423 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CX3CL1P78423 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CX3CL1P78423 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CX3CL1P78423 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC15.97■□□□□ 0.15
CX3CL1P78423 AC092118.2-201ENST00000613495 667 ntBASIC15.97■□□□□ 0.15
CX3CL1P78423 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CX3CL1P78423 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CX3CL1P78423 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CX3CL1P78423 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
CX3CL1P78423 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CX3CL1P78423 PCDHAC2-203ENST00000615316 3011 ntBASIC15.97■□□□□ 0.15
CX3CL1P78423 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CX3CL1P78423 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms