Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RNF4P78317 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF4P78317 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF4P78317 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF4P78317 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
RNF4P78317 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF4P78317 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.41■□□□□ 0.54
RNF4P78317 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF4P78317 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RNF4P78317 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 GCSHP5-201ENST00000443090 522 ntBASIC18.41■□□□□ 0.54
RNF4P78317 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.41■□□□□ 0.54
RNF4P78317 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF4P78317 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF4P78317 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RNF4P78317 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RNF4P78317 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RNF4P78317 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RNF4P78317 AL158047.1-201ENST00000445918 881 ntBASIC18.4■□□□□ 0.54
RNF4P78317 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF4P78317 RPPH1-201ENST00000516869 333 ntBASIC18.4■□□□□ 0.54
RNF4P78317 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.4■□□□□ 0.54
RNF4P78317 PRKY-204ENST00000533551 1019 ntBASIC18.4■□□□□ 0.54
RNF4P78317 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.4■□□□□ 0.54
RNF4P78317 AL359736.2-201ENST00000621992 437 ntBASIC18.4■□□□□ 0.54
RNF4P78317 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF4P78317 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.4■□□□□ 0.54
RNF4P78317 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RNF4P78317 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF4P78317 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF4P78317 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNF4P78317 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RNF4P78317 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.54
RNF4P78317 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF4P78317 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF4P78317 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.39■□□□□ 0.53
RNF4P78317 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.39■□□□□ 0.53
RNF4P78317 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
RNF4P78317 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.39■□□□□ 0.53
RNF4P78317 AL023875.1-201ENST00000640777 796 ntBASIC18.39■□□□□ 0.53
RNF4P78317 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
RNF4P78317 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.39■□□□□ 0.53
RNF4P78317 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.39■□□□□ 0.53
RNF4P78317 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RNF4P78317 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF4P78317 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF4P78317 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
RNF4P78317 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF4P78317 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms