Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC137761.2-201ENST00000561729 223 ntBASIC19.48■□□□□ 0.71
PKNOX1P55347 AC145350.3-201ENST00000569033 163 ntBASIC19.48■□□□□ 0.71
PKNOX1P55347 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.48■□□□□ 0.71
PKNOX1P55347 AC100791.3-201ENST00000617619 330 ntBASIC19.48■□□□□ 0.71
PKNOX1P55347 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.48■□□□□ 0.71
PKNOX1P55347 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.48■□□□□ 0.71
PKNOX1P55347 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PKNOX1P55347 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PKNOX1P55347 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.48■□□□□ 0.71
PKNOX1P55347 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.47■□□□□ 0.71
PKNOX1P55347 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.47■□□□□ 0.71
PKNOX1P55347 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.47■□□□□ 0.71
PKNOX1P55347 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.47■□□□□ 0.71
PKNOX1P55347 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.47■□□□□ 0.71
PKNOX1P55347 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.47■□□□□ 0.71
PKNOX1P55347 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
PKNOX1P55347 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
PKNOX1P55347 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.47■□□□□ 0.71
PKNOX1P55347 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PKNOX1P55347 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
PKNOX1P55347 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PKNOX1P55347 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.46■□□□□ 0.71
PKNOX1P55347 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.46■□□□□ 0.71
PKNOX1P55347 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.46■□□□□ 0.71
PKNOX1P55347 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.46■□□□□ 0.71
PKNOX1P55347 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PKNOX1P55347 AC087623.3-201ENST00000607047 1098 ntBASIC19.46■□□□□ 0.71
PKNOX1P55347 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PKNOX1P55347 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
PKNOX1P55347 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.46■□□□□ 0.71
PKNOX1P55347 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PKNOX1P55347 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.46■□□□□ 0.71
PKNOX1P55347 TNXA-203ENST00000507684 2038 ntBASIC19.46■□□□□ 0.71
PKNOX1P55347 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PKNOX1P55347 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.46■□□□□ 0.71
PKNOX1P55347 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.45■□□□□ 0.7
PKNOX1P55347 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PKNOX1P55347 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PKNOX1P55347 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
PKNOX1P55347 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
PKNOX1P55347 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 MCRIP2P1-201ENST00000394346 511 ntBASIC19.45■□□□□ 0.7
PKNOX1P55347 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.45■□□□□ 0.7
PKNOX1P55347 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 MFSD11-216ENST00000590393 1141 ntBASIC19.45■□□□□ 0.7
PKNOX1P55347 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.45■□□□□ 0.7
PKNOX1P55347 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.45■□□□□ 0.7
PKNOX1P55347 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.45■□□□□ 0.7
PKNOX1P55347 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PKNOX1P55347 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PKNOX1P55347 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.44■□□□□ 0.7
PKNOX1P55347 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 RARRES2P4-201ENST00000514074 484 ntBASIC19.44■□□□□ 0.7
PKNOX1P55347 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PKNOX1P55347 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.44■□□□□ 0.7
PKNOX1P55347 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.44■□□□□ 0.7
PKNOX1P55347 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PKNOX1P55347 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.44■□□□□ 0.7
PKNOX1P55347 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.44■□□□□ 0.7
PKNOX1P55347 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms