Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA1P55317 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
FOXA1P55317 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA1P55317 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXA1P55317 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
FOXA1P55317 AL020996.1-203ENST00000536896 2307 ntBASIC19.25■□□□□ 0.67
FOXA1P55317 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
FOXA1P55317 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
FOXA1P55317 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXA1P55317 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.25■□□□□ 0.67
FOXA1P55317 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXA1P55317 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXA1P55317 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXA1P55317 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXA1P55317 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXA1P55317 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 KRT8P20-201ENST00000423953 1409 ntBASIC19.25■□□□□ 0.67
FOXA1P55317 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXA1P55317 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
FOXA1P55317 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXA1P55317 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
FOXA1P55317 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXA1P55317 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.24■□□□□ 0.67
FOXA1P55317 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.24■□□□□ 0.67
FOXA1P55317 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXA1P55317 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXA1P55317 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXA1P55317 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXA1P55317 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXA1P55317 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.23■□□□□ 0.67
FOXA1P55317 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.23■□□□□ 0.67
FOXA1P55317 BID-214ENST00000617586 542 ntTSL 5 BASIC19.23■□□□□ 0.67
FOXA1P55317 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 KRT16P6-202ENST00000425692 1426 ntBASIC19.23■□□□□ 0.67
FOXA1P55317 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXA1P55317 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
FOXA1P55317 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 AL162430.1-201ENST00000480705 870 ntBASIC19.22■□□□□ 0.67
FOXA1P55317 AC069236.1-201ENST00000604339 616 ntBASIC19.22■□□□□ 0.67
FOXA1P55317 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXA1P55317 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXA1P55317 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXA1P55317 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXA1P55317 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
FOXA1P55317 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXA1P55317 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXA1P55317 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.22■□□□□ 0.67
FOXA1P55317 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXA1P55317 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 KRT17P1-201ENST00000399211 1546 ntBASIC19.21■□□□□ 0.67
FOXA1P55317 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
FOXA1P55317 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXA1P55317 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXA1P55317 AC093787.1-201ENST00000450396 207 ntBASIC19.21■□□□□ 0.67
FOXA1P55317 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms