Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.08■□□□□ 0.81
CHRNA4P43681 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CHRNA4P43681 AC006557.6-201ENST00000623071 864 ntBASIC20.08■□□□□ 0.81
CHRNA4P43681 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHRNA4P43681 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CHRNA4P43681 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHRNA4P43681 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHRNA4P43681 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.07■□□□□ 0.8
CHRNA4P43681 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CHRNA4P43681 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.07■□□□□ 0.8
CHRNA4P43681 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.07■□□□□ 0.8
CHRNA4P43681 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.07■□□□□ 0.8
CHRNA4P43681 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CHRNA4P43681 AC092368.3-202ENST00000574180 1591 ntBASIC20.07■□□□□ 0.8
CHRNA4P43681 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.07■□□□□ 0.8
CHRNA4P43681 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHRNA4P43681 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHRNA4P43681 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CHRNA4P43681 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHRNA4P43681 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHRNA4P43681 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.06■□□□□ 0.8
CHRNA4P43681 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHRNA4P43681 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.06■□□□□ 0.8
CHRNA4P43681 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.06■□□□□ 0.8
CHRNA4P43681 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.06■□□□□ 0.8
CHRNA4P43681 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHRNA4P43681 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.06■□□□□ 0.8
CHRNA4P43681 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.06■□□□□ 0.8
CHRNA4P43681 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.06■□□□□ 0.8
CHRNA4P43681 AC005829.2-201ENST00000571422 1056 ntBASIC20.06■□□□□ 0.8
CHRNA4P43681 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CHRNA4P43681 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CHRNA4P43681 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHRNA4P43681 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHRNA4P43681 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.05■□□□□ 0.8
CHRNA4P43681 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CHRNA4P43681 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CHRNA4P43681 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CHRNA4P43681 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CHRNA4P43681 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.05■□□□□ 0.8
CHRNA4P43681 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.05■□□□□ 0.8
CHRNA4P43681 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.05■□□□□ 0.8
CHRNA4P43681 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.05■□□□□ 0.8
CHRNA4P43681 HLA-B-256ENST00000639848 1089 ntBASIC20.05■□□□□ 0.8
CHRNA4P43681 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.05■□□□□ 0.8
CHRNA4P43681 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.05■□□□□ 0.8
CHRNA4P43681 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.05■□□□□ 0.8
CHRNA4P43681 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.05■□□□□ 0.8
CHRNA4P43681 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHRNA4P43681 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.04■□□□□ 0.8
CHRNA4P43681 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.04■□□□□ 0.8
CHRNA4P43681 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CHRNA4P43681 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.04■□□□□ 0.8
CHRNA4P43681 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.04■□□□□ 0.8
CHRNA4P43681 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.04■□□□□ 0.8
CHRNA4P43681 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.04■□□□□ 0.8
CHRNA4P43681 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.04■□□□□ 0.8
CHRNA4P43681 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.04■□□□□ 0.8
CHRNA4P43681 AC060766.5-201ENST00000590539 871 ntBASIC20.04■□□□□ 0.8
CHRNA4P43681 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
CHRNA4P43681 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHRNA4P43681 AC124283.5-201ENST00000624661 1809 ntBASIC20.04■□□□□ 0.8
CHRNA4P43681 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CHRNA4P43681 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CHRNA4P43681 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms