Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX1P28360 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX1P28360 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX1P28360 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
MSX1P28360 AC092667.1-201ENST00000434301 2586 ntBASIC18.21■□□□□ 0.51
MSX1P28360 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSX1P28360 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSX1P28360 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
MSX1P28360 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.2■□□□□ 0.5
MSX1P28360 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.2■□□□□ 0.5
MSX1P28360 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.2■□□□□ 0.5
MSX1P28360 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.2■□□□□ 0.5
MSX1P28360 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 BX119927.1-201ENST00000636596 1552 ntBASIC18.2■□□□□ 0.5
MSX1P28360 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MSX1P28360 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSX1P28360 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.2■□□□□ 0.5
MSX1P28360 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.19■□□□□ 0.5
MSX1P28360 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.19■□□□□ 0.5
MSX1P28360 FAM197Y4-202ENST00000622692 608 ntBASIC18.19■□□□□ 0.5
MSX1P28360 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.19■□□□□ 0.5
MSX1P28360 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.19■□□□□ 0.5
MSX1P28360 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.19■□□□□ 0.5
MSX1P28360 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MSX1P28360 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
MSX1P28360 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.18■□□□□ 0.5
MSX1P28360 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
MSX1P28360 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MSX1P28360 KRT17P3-201ENST00000420566 1262 ntBASIC18.18■□□□□ 0.5
MSX1P28360 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.18■□□□□ 0.5
MSX1P28360 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.18■□□□□ 0.5
MSX1P28360 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.18■□□□□ 0.5
MSX1P28360 RPPH1-201ENST00000516869 333 ntBASIC18.18■□□□□ 0.5
MSX1P28360 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.18■□□□□ 0.5
MSX1P28360 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.18■□□□□ 0.5
MSX1P28360 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.18■□□□□ 0.5
MSX1P28360 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
MSX1P28360 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.18■□□□□ 0.5
MSX1P28360 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
MSX1P28360 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.18■□□□□ 0.5
MSX1P28360 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX1P28360 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.17■□□□□ 0.5
MSX1P28360 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
MSX1P28360 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
MSX1P28360 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
MSX1P28360 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
MSX1P28360 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.17■□□□□ 0.5
MSX1P28360 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.17■□□□□ 0.5
MSX1P28360 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX1P28360 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.17■□□□□ 0.5
MSX1P28360 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.17■□□□□ 0.5
MSX1P28360 C1QBPP2-201ENST00000528754 825 ntBASIC18.17■□□□□ 0.5
MSX1P28360 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms