Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX1P22670 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX1P22670 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX1P22670 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RFX1P22670 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.64■■□□□ 1.05
RFX1P22670 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.64■■□□□ 1.05
RFX1P22670 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
RFX1P22670 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.64■■□□□ 1.05
RFX1P22670 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RFX1P22670 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.64■■□□□ 1.05
RFX1P22670 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.64■■□□□ 1.05
RFX1P22670 PTBP1P-201ENST00000554374 1601 ntBASIC21.64■■□□□ 1.05
RFX1P22670 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
RFX1P22670 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX1P22670 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX1P22670 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RFX1P22670 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RFX1P22670 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.64■■□□□ 1.05
RFX1P22670 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RFX1P22670 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX1P22670 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
RFX1P22670 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.63■■□□□ 1.05
RFX1P22670 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
RFX1P22670 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX1P22670 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX1P22670 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.63■■□□□ 1.05
RFX1P22670 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
RFX1P22670 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
RFX1P22670 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX1P22670 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.63■■□□□ 1.05
RFX1P22670 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.63■■□□□ 1.05
RFX1P22670 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX1P22670 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.62■■□□□ 1.05
RFX1P22670 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RFX1P22670 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RFX1P22670 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RFX1P22670 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.62■■□□□ 1.05
RFX1P22670 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
RFX1P22670 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
RFX1P22670 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RFX1P22670 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
RFX1P22670 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.61■■□□□ 1.05
RFX1P22670 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.61■■□□□ 1.05
RFX1P22670 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 MIR1224-201ENST00000408193 85 ntBASIC21.61■■□□□ 1.05
RFX1P22670 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.61■■□□□ 1.05
RFX1P22670 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.61■■□□□ 1.05
RFX1P22670 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.61■■□□□ 1.05
RFX1P22670 AL589743.5-201ENST00000616611 1050 ntBASIC21.61■■□□□ 1.05
RFX1P22670 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 TMEM179-206ENST00000616017 1645 ntBASIC21.61■■□□□ 1.05
RFX1P22670 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
RFX1P22670 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
RFX1P22670 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.61■■□□□ 1.05
RFX1P22670 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFX1P22670 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
RFX1P22670 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.6■■□□□ 1.05
RFX1P22670 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFX1P22670 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.6■■□□□ 1.05
RFX1P22670 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.6■■□□□ 1.05
RFX1P22670 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.6■■□□□ 1.05
RFX1P22670 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFX1P22670 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
RFX1P22670 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.6■■□□□ 1.05
RFX1P22670 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.6■■□□□ 1.05
RFX1P22670 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.6■■□□□ 1.05
RFX1P22670 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.6■■□□□ 1.05
RFX1P22670 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.6■■□□□ 1.05
RFX1P22670 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.6■■□□□ 1.05
RFX1P22670 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFX1P22670 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.6■■□□□ 1.05
RFX1P22670 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms