Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.57■□□□□ 0.88
COL9A1P20849 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.57■□□□□ 0.88
COL9A1P20849 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.57■□□□□ 0.88
COL9A1P20849 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.57■□□□□ 0.88
COL9A1P20849 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.57■□□□□ 0.88
COL9A1P20849 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL9A1P20849 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL9A1P20849 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL9A1P20849 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
COL9A1P20849 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.56■□□□□ 0.88
COL9A1P20849 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.56■□□□□ 0.88
COL9A1P20849 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.56■□□□□ 0.88
COL9A1P20849 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.56■□□□□ 0.88
COL9A1P20849 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.56■□□□□ 0.88
COL9A1P20849 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.56■□□□□ 0.88
COL9A1P20849 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.56■□□□□ 0.88
COL9A1P20849 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
COL9A1P20849 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL9A1P20849 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL9A1P20849 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL9A1P20849 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL9A1P20849 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL9A1P20849 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL9A1P20849 AL355385.1-201ENST00000606123 409 ntBASIC20.55■□□□□ 0.88
COL9A1P20849 FAM87A-204ENST00000613235 858 ntBASIC20.55■□□□□ 0.88
COL9A1P20849 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL9A1P20849 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL9A1P20849 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL9A1P20849 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL9A1P20849 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.54■□□□□ 0.88
COL9A1P20849 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.54■□□□□ 0.88
COL9A1P20849 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL9A1P20849 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.54■□□□□ 0.88
COL9A1P20849 MESTP1-201ENST00000404287 994 ntBASIC20.54■□□□□ 0.88
COL9A1P20849 AL390719.1-204ENST00000412397 1219 ntBASIC20.54■□□□□ 0.88
COL9A1P20849 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.54■□□□□ 0.88
COL9A1P20849 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.54■□□□□ 0.88
COL9A1P20849 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 CR392000.1-201ENST00000624770 1228 ntBASIC20.54■□□□□ 0.88
COL9A1P20849 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
COL9A1P20849 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL9A1P20849 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL9A1P20849 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
COL9A1P20849 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.53■□□□□ 0.88
COL9A1P20849 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.53■□□□□ 0.88
COL9A1P20849 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.53■□□□□ 0.88
COL9A1P20849 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
COL9A1P20849 NBPF21P-201ENST00000425093 1451 ntBASIC20.53■□□□□ 0.88
COL9A1P20849 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.53■□□□□ 0.88
COL9A1P20849 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
COL9A1P20849 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL9A1P20849 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL9A1P20849 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.52■□□□□ 0.88
COL9A1P20849 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL9A1P20849 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
COL9A1P20849 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL9A1P20849 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
COL9A1P20849 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL9A1P20849 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL9A1P20849 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.52■□□□□ 0.88
COL9A1P20849 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL9A1P20849 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.87
COL9A1P20849 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.52■□□□□ 0.87
COL9A1P20849 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.52■□□□□ 0.87
COL9A1P20849 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.52■□□□□ 0.87
COL9A1P20849 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.51■□□□□ 0.87
COL9A1P20849 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL9A1P20849 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms