Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
SGCEO43556 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SGCEO43556 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.55■□□□□ 0.4
SGCEO43556 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
SGCEO43556 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.55■□□□□ 0.4
SGCEO43556 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.55■□□□□ 0.4
SGCEO43556 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.55■□□□□ 0.4
SGCEO43556 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.55■□□□□ 0.4
SGCEO43556 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SGCEO43556 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SGCEO43556 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 AL020996.1-203ENST00000536896 2307 ntBASIC17.54■□□□□ 0.4
SGCEO43556 BX119927.1-201ENST00000636596 1552 ntBASIC17.54■□□□□ 0.4
SGCEO43556 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
SGCEO43556 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
SGCEO43556 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.54■□□□□ 0.4
SGCEO43556 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.54■□□□□ 0.4
SGCEO43556 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.54■□□□□ 0.4
SGCEO43556 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.54■□□□□ 0.4
SGCEO43556 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.54■□□□□ 0.4
SGCEO43556 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.54■□□□□ 0.4
SGCEO43556 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.54■□□□□ 0.4
SGCEO43556 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SGCEO43556 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SGCEO43556 AC026471.1-201ENST00000564629 3026 ntBASIC17.54■□□□□ 0.4
SGCEO43556 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.54■□□□□ 0.4
SGCEO43556 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SGCEO43556 PTBP1P-201ENST00000554374 1601 ntBASIC17.54■□□□□ 0.4
SGCEO43556 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SGCEO43556 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SGCEO43556 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SGCEO43556 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SGCEO43556 TCF3P1-201ENST00000423021 1937 ntBASIC17.53■□□□□ 0.4
SGCEO43556 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SGCEO43556 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.53■□□□□ 0.4
SGCEO43556 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.53■□□□□ 0.4
SGCEO43556 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.53■□□□□ 0.4
SGCEO43556 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
SGCEO43556 SLC29A4P1-201ENST00000398760 971 ntBASIC17.53■□□□□ 0.4
SGCEO43556 NCF1B-203ENST00000435988 1254 ntBASIC17.53■□□□□ 0.4
SGCEO43556 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SGCEO43556 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.53■□□□□ 0.4
SGCEO43556 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
SGCEO43556 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.53■□□□□ 0.4
SGCEO43556 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 KRT8P17-201ENST00000453110 1448 ntBASIC17.53■□□□□ 0.4
SGCEO43556 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.53■□□□□ 0.4
SGCEO43556 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SGCEO43556 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.53■□□□□ 0.4
SGCEO43556 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SGCEO43556 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SGCEO43556 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.52■□□□□ 0.4
SGCEO43556 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SGCEO43556 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.52■□□□□ 0.4
SGCEO43556 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SGCEO43556 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SGCEO43556 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SGCEO43556 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
SGCEO43556 GPX1P1-201ENST00000388829 606 ntBASIC17.52■□□□□ 0.4
SGCEO43556 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SGCEO43556 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.52■□□□□ 0.4
SGCEO43556 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SGCEO43556 AL031963.3-201ENST00000606441 850 ntBASIC17.52■□□□□ 0.4
SGCEO43556 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.52■□□□□ 0.4
SGCEO43556 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.52■□□□□ 0.39
SGCEO43556 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SGCEO43556 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
SGCEO43556 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms