Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.88■□□□□ 0.61
PROM1O43490 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
PROM1O43490 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.88■□□□□ 0.61
PROM1O43490 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PROM1O43490 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PROM1O43490 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PROM1O43490 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.88■□□□□ 0.61
PROM1O43490 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PROM1O43490 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.88■□□□□ 0.61
PROM1O43490 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PROM1O43490 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PROM1O43490 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PROM1O43490 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PROM1O43490 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PROM1O43490 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 KRT16P6-202ENST00000425692 1426 ntBASIC18.87■□□□□ 0.61
PROM1O43490 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.87■□□□□ 0.61
PROM1O43490 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.87■□□□□ 0.61
PROM1O43490 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.87■□□□□ 0.61
PROM1O43490 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
PROM1O43490 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PROM1O43490 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.86■□□□□ 0.61
PROM1O43490 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.86■□□□□ 0.61
PROM1O43490 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PROM1O43490 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.86■□□□□ 0.61
PROM1O43490 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PROM1O43490 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.86■□□□□ 0.61
PROM1O43490 AC005829.2-201ENST00000571422 1056 ntBASIC18.86■□□□□ 0.61
PROM1O43490 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
PROM1O43490 HLA-B-256ENST00000639848 1089 ntBASIC18.86■□□□□ 0.61
PROM1O43490 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.86■□□□□ 0.61
PROM1O43490 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PROM1O43490 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.85■□□□□ 0.61
PROM1O43490 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
PROM1O43490 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
PROM1O43490 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PROM1O43490 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.85■□□□□ 0.61
PROM1O43490 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.85■□□□□ 0.61
PROM1O43490 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.85■□□□□ 0.61
PROM1O43490 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.85■□□□□ 0.61
PROM1O43490 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.85■□□□□ 0.61
PROM1O43490 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.85■□□□□ 0.61
PROM1O43490 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
PROM1O43490 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.85■□□□□ 0.61
PROM1O43490 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.85■□□□□ 0.61
PROM1O43490 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 PCDHAC2-203ENST00000615316 3011 ntBASIC18.85■□□□□ 0.61
PROM1O43490 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PROM1O43490 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.84■□□□□ 0.61
PROM1O43490 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.84■□□□□ 0.61
PROM1O43490 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.84■□□□□ 0.61
PROM1O43490 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.84■□□□□ 0.61
PROM1O43490 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.84■□□□□ 0.61
PROM1O43490 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.84■□□□□ 0.61
PROM1O43490 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms