Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC22.4■■□□□ 1.18
MSH4O15457 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.4■■□□□ 1.18
MSH4O15457 AC018553.1-201ENST00000616682 1458 ntBASIC22.4■■□□□ 1.18
MSH4O15457 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.4■■□□□ 1.18
MSH4O15457 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
MSH4O15457 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
MSH4O15457 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
MSH4O15457 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.39■■□□□ 1.18
MSH4O15457 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.39■■□□□ 1.17
MSH4O15457 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
MSH4O15457 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC22.39■■□□□ 1.17
MSH4O15457 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC22.39■■□□□ 1.17
MSH4O15457 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.39■■□□□ 1.17
MSH4O15457 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.39■■□□□ 1.17
MSH4O15457 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
MSH4O15457 PKD1P6-201ENST00000343738 4769 ntBASIC22.39■■□□□ 1.17
MSH4O15457 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.38■■□□□ 1.17
MSH4O15457 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
MSH4O15457 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
MSH4O15457 AC239809.2-201ENST00000415381 517 ntBASIC22.38■■□□□ 1.17
MSH4O15457 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 AC133681.1-201ENST00000465482 601 ntBASIC22.38■■□□□ 1.17
MSH4O15457 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC22.38■■□□□ 1.17
MSH4O15457 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH4O15457 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH4O15457 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC22.38■■□□□ 1.17
MSH4O15457 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
MSH4O15457 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22.38■■□□□ 1.17
MSH4O15457 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
MSH4O15457 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
MSH4O15457 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
MSH4O15457 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.37■■□□□ 1.17
MSH4O15457 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH4O15457 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH4O15457 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH4O15457 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.37■■□□□ 1.17
MSH4O15457 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
MSH4O15457 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH4O15457 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
MSH4O15457 KRASP1-201ENST00000407852 552 ntBASIC22.37■■□□□ 1.17
MSH4O15457 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH4O15457 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.37■■□□□ 1.17
MSH4O15457 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH4O15457 PRKY-204ENST00000533551 1019 ntBASIC22.37■■□□□ 1.17
MSH4O15457 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.37■■□□□ 1.17
MSH4O15457 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH4O15457 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MSH4O15457 TFP1-202ENST00000475455 1573 ntBASIC22.37■■□□□ 1.17
MSH4O15457 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
MSH4O15457 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
MSH4O15457 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
MSH4O15457 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
MSH4O15457 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.36■■□□□ 1.17
MSH4O15457 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH4O15457 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH4O15457 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.36■■□□□ 1.17
MSH4O15457 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH4O15457 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH4O15457 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.35■■□□□ 1.17
MSH4O15457 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms