Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SMKR1H3BMG3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SMKR1H3BMG3 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SMKR1H3BMG3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC14.52□□□□□ -0.08
SMKR1H3BMG3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 OR2A1-AS1-204ENST00000470435 602 ntBASIC14.52□□□□□ -0.09
SMKR1H3BMG3 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 GRAMD4P7-201ENST00000578182 1232 ntBASIC14.52□□□□□ -0.09
SMKR1H3BMG3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SMKR1H3BMG3 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 FZD10-202ENST00000539839 3282 ntBASIC14.51□□□□□ -0.09
SMKR1H3BMG3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 AC105233.4-201ENST00000642045 216 ntBASIC14.51□□□□□ -0.09
SMKR1H3BMG3 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SMKR1H3BMG3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 SRR-208ENST00000576848 588 ntTSL 4 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 AC126544.1-201ENST00000580842 1059 ntBASIC14.5□□□□□ -0.09
SMKR1H3BMG3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 AL032819.2-201ENST00000624543 2162 ntBASIC14.5□□□□□ -0.09
SMKR1H3BMG3 AC018470.1-201ENST00000624790 3129 ntBASIC14.5□□□□□ -0.09
SMKR1H3BMG3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SMKR1H3BMG3 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 AL049812.1-201ENST00000432563 2267 ntBASIC14.49□□□□□ -0.09
SMKR1H3BMG3 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC14.49□□□□□ -0.09
SMKR1H3BMG3 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms