Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4CQ96CF2 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4CQ96CF2 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC8.31□□□□□ -1.08
CHMP4CQ96CF2 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AC007406.5-201ENST00000570140 3170 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 RNU1-24P-201ENST00000364285 165 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AC012358.1-201ENST00000366153 916 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 CHL1-AS1-201ENST00000417612 913 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 SNX19-202ENST00000426933 888 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AL513303.1-201ENST00000432452 591 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 OSTCP2-201ENST00000437956 444 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 GAPDHP53-201ENST00000458397 924 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AL135933.1-201ENST00000498657 802 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 RPL7L1P7-201ENST00000509986 724 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 RNU6ATAC39P-201ENST00000516309 149 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AC130366.1-201ENST00000526505 1192 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AP002004.1-206ENST00000532441 876 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AC079866.1-201ENST00000534985 1220 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AL133406.3-201ENST00000606817 541 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 AC008626.2-201ENST00000624425 248 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 CCAT2-201ENST00000630920 1752 ntBASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC8.3□□□□□ -1.08
CHMP4CQ96CF2 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AC005839.1-201ENST00000624148 3213 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 RNA5SP114-201ENST00000363780 113 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 IL20-203ENST00000391930 1153 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 EEF1GP6-201ENST00000402309 905 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 FAM204CP-201ENST00000424489 642 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 BX005266.3-201ENST00000443013 1075 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 TFP1-201ENST00000460564 572 ntTSL 4 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AC022730.1-201ENST00000473114 568 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 TFP1-203ENST00000490470 561 ntTSL 4 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 TECRP2-201ENST00000503270 928 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 EEF1B2P2-201ENST00000519625 676 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AC089984.3-201ENST00000552838 363 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 FXNP1-201ENST00000555153 337 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 COX6CP16-201ENST00000603667 216 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AC073389.3-201ENST00000609434 935 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 MIR6070-201ENST00000613967 103 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 AC087894.3-201ENST00000623682 349 ntBASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 CREM-216ENST00000429130 1476 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CHMP4CQ96CF2 HSPD1P1-201ENST00000503199 1726 ntBASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms