Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 UBTFL2-201ENST00000411859 1191 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC068647.2-202ENST00000485020 390 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 RN7SL37P-201ENST00000490461 307 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 PFN2-217ENST00000498307 556 ntTSL 4 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 RNA5SP318-201ENST00000516352 92 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 NDUFA5P11-201ENST00000567995 343 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 GAPDHP41-201ENST00000613707 975 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AL683826.1-201ENST00000624104 627 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC017037.4-201ENST00000624526 826 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AC027559.1-201ENST00000636288 271 ntBASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HDDC3Q8N4P3 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 TMEM75-201ENST00000624314 2165 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 MELK-211ENST00000545008 2236 ntTSL 2 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 NRIR-201ENST00000366140 799 ntTSL 3 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC019178.1-201ENST00000392337 440 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AL139158.1-201ENST00000424719 340 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 ETF1P1-206ENST00000427296 984 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 RPS10P18-201ENST00000442662 495 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC234771.2-201ENST00000445718 597 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 PSMA6P2-201ENST00000457574 686 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC010442.1-201ENST00000515583 816 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 RNU6-964P-201ENST00000516524 69 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC023827.2-201ENST00000566880 1061 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC127071.2-201ENST00000623293 527 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC073592.6-201ENST00000624271 415 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 AC139426.3-201ENST00000605648 2059 ntBASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HDDC3Q8N4P3 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
HDDC3Q8N4P3 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms