Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC7.16□□□□□ -1.26
APOEP02649 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC7.16□□□□□ -1.26
APOEP02649 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
APOEP02649 PLEKHA3P1-201ENST00000598554 894 ntBASIC7.16□□□□□ -1.26
APOEP02649 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC7.16□□□□□ -1.26
APOEP02649 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.16□□□□□ -1.26
APOEP02649 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC7.16□□□□□ -1.26
APOEP02649 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC7.16□□□□□ -1.26
APOEP02649 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
APOEP02649 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
APOEP02649 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
APOEP02649 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
APOEP02649 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC7.16□□□□□ -1.26
APOEP02649 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
APOEP02649 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
APOEP02649 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC7.15□□□□□ -1.26
APOEP02649 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
APOEP02649 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
APOEP02649 AC007938.1-201ENST00000562524 2902 ntBASIC7.15□□□□□ -1.26
APOEP02649 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
APOEP02649 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
APOEP02649 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 GMFG-201ENST00000253054 616 ntTSL 5 BASIC7.15□□□□□ -1.26
APOEP02649 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
APOEP02649 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC7.15□□□□□ -1.26
APOEP02649 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.26
APOEP02649 RPL9P21-201ENST00000392269 505 ntBASIC7.15□□□□□ -1.26
APOEP02649 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.15□□□□□ -1.26
APOEP02649 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC7.15□□□□□ -1.26
APOEP02649 BMS1P11-201ENST00000442351 885 ntBASIC7.15□□□□□ -1.26
APOEP02649 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC7.15□□□□□ -1.26
APOEP02649 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC7.15□□□□□ -1.26
APOEP02649 BMS1P9-201ENST00000457640 885 ntBASIC7.15□□□□□ -1.26
APOEP02649 RN7SL390P-201ENST00000470634 284 ntBASIC7.15□□□□□ -1.26
APOEP02649 RN7SL216P-201ENST00000471607 298 ntBASIC7.15□□□□□ -1.26
APOEP02649 IGKV2D-38-201ENST00000518423 240 ntBASIC7.15□□□□□ -1.26
APOEP02649 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
APOEP02649 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.15□□□□□ -1.26
APOEP02649 PPIAP6-201ENST00000557078 499 ntBASIC7.15□□□□□ -1.26
APOEP02649 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC7.15□□□□□ -1.26
APOEP02649 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC7.15□□□□□ -1.26
APOEP02649 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.15□□□□□ -1.26
APOEP02649 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC7.15□□□□□ -1.27
APOEP02649 AC009220.2-201ENST00000489759 1751 ntBASIC7.15□□□□□ -1.27
APOEP02649 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.15□□□□□ -1.27
APOEP02649 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
APOEP02649 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC7.15□□□□□ -1.27
APOEP02649 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
APOEP02649 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
APOEP02649 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
APOEP02649 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
APOEP02649 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC7.14□□□□□ -1.27
APOEP02649 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC7.14□□□□□ -1.27
APOEP02649 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
APOEP02649 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 AL512329.1-201ENST00000404600 1592 ntBASIC7.14□□□□□ -1.27
APOEP02649 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC7.14□□□□□ -1.27
APOEP02649 RPSAP60-201ENST00000415403 880 ntBASIC7.14□□□□□ -1.27
APOEP02649 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC7.14□□□□□ -1.27
APOEP02649 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC7.14□□□□□ -1.27
APOEP02649 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC7.14□□□□□ -1.27
APOEP02649 TFP1-201ENST00000460564 572 ntTSL 4 BASIC7.14□□□□□ -1.27
APOEP02649 RN7SL654P-201ENST00000479178 292 ntBASIC7.14□□□□□ -1.27
APOEP02649 TFP1-203ENST00000490470 561 ntTSL 4 BASIC7.14□□□□□ -1.27
APOEP02649 PFN2-213ENST00000494827 793 ntTSL 4 BASIC7.14□□□□□ -1.27
APOEP02649 RNA5SP116-201ENST00000516132 98 ntBASIC7.14□□□□□ -1.27
APOEP02649 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC7.14□□□□□ -1.27
APOEP02649 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 AC016144.1-201ENST00000548175 1087 ntBASIC7.14□□□□□ -1.27
APOEP02649 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC7.14□□□□□ -1.27
APOEP02649 MIR5010-201ENST00000582846 120 ntBASIC7.14□□□□□ -1.27
APOEP02649 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC7.14□□□□□ -1.27
APOEP02649 AC020914.7-201ENST00000594477 545 ntBASIC7.14□□□□□ -1.27
APOEP02649 AC004908.1-201ENST00000606572 541 ntBASIC7.14□□□□□ -1.27
APOEP02649 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC7.14□□□□□ -1.27
APOEP02649 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
APOEP02649 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
APOEP02649 AC116165.3-201ENST00000614524 400 ntBASIC7.14□□□□□ -1.27
APOEP02649 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
APOEP02649 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC7.14□□□□□ -1.27
APOEP02649 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
APOEP02649 AL596275.2-208ENST00000641192 594 ntBASIC7.14□□□□□ -1.27
APOEP02649 MAPK10-379ENST00000642013 1385 ntBASIC7.14□□□□□ -1.27
APOEP02649 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms