Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 HMGB1P49-201ENST00000418882 569 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 MTND5P25-201ENST00000430499 799 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 RPSAP62-201ENST00000432596 833 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC096632.2-201ENST00000438139 1239 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC019185.3-201ENST00000438805 323 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC073052.1-201ENST00000440417 714 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 HMGB3P6-201ENST00000444896 598 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 ENTPD1-AS1-206ENST00000449197 523 ntTSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 MED28P8-201ENST00000454831 521 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 RN7SL36P-201ENST00000469345 276 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 DUBR-205ENST00000495228 411 ntTSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC084871.2-201ENST00000503355 464 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC017007.5-201ENST00000511590 874 ntTSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 NR1I3-233ENST00000515452 1093 ntTSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC027369.2-201ENST00000528030 440 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 OR8I1P-201ENST00000529291 931 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC006518.2-201ENST00000542513 940 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 OR11H3P-201ENST00000554547 982 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC145350.1-201ENST00000567426 208 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 RBM22P1-201ENST00000578589 1214 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC130324.2-201ENST00000580873 638 ntTSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC021506.1-201ENST00000581971 597 ntTSL 5 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AL161725.1-210ENST00000590240 1224 ntTSL 5 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC068631.1-229ENST00000599314 739 ntTSL 5 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC025588.2-201ENST00000604851 466 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 OR2BH1P-201ENST00000608850 864 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 PART1_3.1-201ENST00000619680 131 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AC091304.6-201ENST00000619761 202 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AP002791.1-201ENST00000623291 381 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 AL157359.3-201ENST00000623771 217 ntBASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 BDNF-213ENST00000525950 3829 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 CORIN-207ENST00000505909 3018 ntTSL 5 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 LY75-CD302-202ENST00000505052 5482 ntAPPRIS ALT2 TSL 2 BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
TRAIPQ9BWF2 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 VN2R3P-201ENST00000422626 1412 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC061975.5-201ENST00000584928 1441 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 IRAK4-214ENST00000613694 4280 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC073055.1-201ENST00000456901 1621 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 OFD1P17-201ENST00000437639 3018 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 LRRC31-204ENST00000523069 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 PTPRT-211ENST00000618610 3230 ntTSL 5 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 MYB-235ENST00000533624 1818 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 MYB-238ENST00000534044 1812 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 LINC00598-208ENST00000617777 2551 ntTSL 2 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 UBE2V2-207ENST00000523111 4373 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 ZNF567-204ENST00000588311 2042 ntTSL 2 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 SNORA10-201ENST00000384084 133 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AL035419.1-201ENST00000397037 564 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 GTF2IP2-201ENST00000424290 697 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC009299.1-201ENST00000429684 717 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC092167.1-201ENST00000435466 495 ntTSL 4 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AL590326.1-201ENST00000460857 334 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 RN7SL549P-201ENST00000478997 282 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 RPL5P33-201ENST00000487833 905 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 TDGP1-201ENST00000543961 1229 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AL133304.1-201ENST00000548199 549 ntTSL 4 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 CHCHD3P2-201ENST00000550751 639 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 MTND4P33-201ENST00000556706 766 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 LINC02289-202ENST00000556781 861 ntTSL 3 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 INO80-AS1-202ENST00000560178 444 ntTSL 3 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 ATP5F1P7-201ENST00000567330 760 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC091304.5-201ENST00000568969 158 ntBASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC8.55□□□□□ -1.04
TRAIPQ9BWF2 MARK3P1-201ENST00000604796 643 ntBASIC8.55□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 282.8 ms