RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 AEBP2Q6ZN18 517 aaPredicted RBP25.38■■□□□ 1.65
HMGB1P49-201ENST00000418882 CHIC1Q5VXU3 224 aa24.67■■□□□ 1.54
HMGB1P49-201ENST00000418882 PHF23Q9BUL5 403 aaPredicted RBP21.8■■□□□ 1.08
HMGB1P49-201ENST00000418882 SENP3Q9H4L4 574 aaPredicted RBP21.35■■□□□ 1.01
HMGB1P49-201ENST00000418882 PLPPR3Q6T4P5 718 aa19.96■□□□□ 0.79
HMGB1P49-201ENST00000418882 FOXD1Q16676 465 aa19.93■□□□□ 0.78
HMGB1P49-201ENST00000418882 PPP6R1Q9UPN7 881 aa19.24■□□□□ 0.67
HMGB1P49-201ENST00000418882 ADRA2BP18089 450 aa19.19■□□□□ 0.66
HMGB1P49-201ENST00000418882 PIAS4Q8N2W9 510 aaPredicted RBP18.73■□□□□ 0.59
HMGB1P49-201ENST00000418882 MSH5O43196 834 aa18.24■□□□□ 0.51
HMGB1P49-201ENST00000418882 PPP4R3CPQ6ZMV5 832 aa17.64■□□□□ 0.41
HMGB1P49-201ENST00000418882 MAPK8IP2Q13387 824 aaPredicted RBP17.44■□□□□ 0.38
HMGB1P49-201ENST00000418882 SCAF1Q9H7N4 1312 aaKnown RBP17.33■□□□□ 0.36
HMGB1P49-201ENST00000418882 KCNA4P22459 653 aa17.31■□□□□ 0.36
HMGB1P49-201ENST00000418882 CNKSR2Q8WXI2 1034 aa17.1■□□□□ 0.33
HMGB1P49-201ENST00000418882 DMRT2Q9Y5R5 561 aa17.09■□□□□ 0.33
HMGB1P49-201ENST00000418882 NCBP3Q53F19 620 aaKnown RBP17.06■□□□□ 0.32
HMGB1P49-201ENST00000418882 NPM3O75607 178 aaKnown RBP16.97■□□□□ 0.31
HMGB1P49-201ENST00000418882 RNF216Q9NWF9 866 aaPredicted RBP16.78■□□□□ 0.28
HMGB1P49-201ENST00000418882 HOXD11P31277 338 aaPredicted RBP16.74■□□□□ 0.27
HMGB1P49-201ENST00000418882 POTEDQ86YR6 584 aa16.72■□□□□ 0.27
HMGB1P49-201ENST00000418882 DNAJC5BQ9UF47 199 aa16.41■□□□□ 0.22
HMGB1P49-201ENST00000418882 SLC4A1APQ9BWU0 796 aaKnown RBP16.4■□□□□ 0.22
HMGB1P49-201ENST00000418882 DCAF8L1A6NGE4 600 aa16.31■□□□□ 0.2
HMGB1P49-201ENST00000418882 SLC4A2P04920 1241 aa16.07■□□□□ 0.16
HMGB1P49-201ENST00000418882 ZBTB22O15209 634 aa16■□□□□ 0.15
HMGB1P49-201ENST00000418882 EHMT2Q96KQ7 1210 aa16■□□□□ 0.15
HMGB1P49-201ENST00000418882 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.89■□□□□ 0.13
HMGB1P49-201ENST00000418882 CSRNP3Q8WYN3 585 aa15.84■□□□□ 0.13
HMGB1P49-201ENST00000418882 FOXD4L1Q9NU39 408 aa15.84■□□□□ 0.13
HMGB1P49-201ENST00000418882 U3KPZ7 1027 aaPredicted RBP15.75■□□□□ 0.11
HMGB1P49-201ENST00000418882 RNF39Q9H2S5 420 aa15.72■□□□□ 0.11
HMGB1P49-201ENST00000418882 MYCNP04198 464 aaPredicted RBP15.6■□□□□ 0.09
HMGB1P49-201ENST00000418882 C1QBPQ07021 282 aaKnown RBP15.44■□□□□ 0.06
HMGB1P49-201ENST00000418882 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.35■□□□□ 0.05
HMGB1P49-201ENST00000418882 HNRNPUL2Q1KMD3 747 aaKnown RBP15.35■□□□□ 0.05
HMGB1P49-201ENST00000418882 SAMD1Q6SPF0 538 aaPredicted RBP15.35■□□□□ 0.05
HMGB1P49-201ENST00000418882 ATF5Q9Y2D1 282 aaPredicted RBP15.34■□□□□ 0.05
HMGB1P49-201ENST00000418882 SPINK5Q9NQ38 1064 aaPredicted RBP15.33■□□□□ 0.04
HMGB1P49-201ENST00000418882 CACNB1Q02641 598 aaPredicted RBP15.25■□□□□ 0.03
HMGB1P49-201ENST00000418882 ATXN8OSP0DMR3 200 aa15.22■□□□□ 0.03
HMGB1P49-201ENST00000418882 CAPN15O75808 1086 aa15.16■□□□□ 0.02
HMGB1P49-201ENST00000418882 APLP2Q06481 763 aa15.14■□□□□ 0.01
HMGB1P49-201ENST00000418882 TRHP20396 242 aaPredicted RBP15.12■□□□□ 0.01
HMGB1P49-201ENST00000418882 ZNF219Q9P2Y4 722 aaPredicted RBP15.04■□□□□ -0
HMGB1P49-201ENST00000418882 DSG3P32926 999 aa14.96□□□□□ -0.01
HMGB1P49-201ENST00000418882 ABCB7O75027 752 aa14.95□□□□□ -0.02
HMGB1P49-201ENST00000418882 POLA2Q14181 598 aa14.87□□□□□ -0.03
HMGB1P49-201ENST00000418882 MKRN4PQ13434 485 aaPredicted RBP14.66□□□□□ -0.06
HMGB1P49-201ENST00000418882 ZBTB12Q9Y330 459 aaPredicted RBP14.5□□□□□ -0.09
HMGB1P49-201ENST00000418882 FBLN2P98095 1184 aa14.48□□□□□ -0.09
HMGB1P49-201ENST00000418882 OSCARQ8IYS5 282 aa14.42□□□□□ -0.1
HMGB1P49-201ENST00000418882 FKBP8Q14318 412 aa14.27□□□□□ -0.13
HMGB1P49-201ENST00000418882 SPDYE4A6NLX3 237 aa14.21□□□□□ -0.13
HMGB1P49-201ENST00000418882 SPDYE2BA6NHP3 402 aa14.18□□□□□ -0.14
HMGB1P49-201ENST00000418882 SPDYE6P0CI01 402 aa14.18□□□□□ -0.14
HMGB1P49-201ENST00000418882 SPDYE2Q495Y8 402 aa14.18□□□□□ -0.14
HMGB1P49-201ENST00000418882 ZNF692Q9BU19 519 aaPredicted RBP14.14□□□□□ -0.15
HMGB1P49-201ENST00000418882 SSUH2Q9Y2M2 353 aa14.14□□□□□ -0.15
HMGB1P49-201ENST00000418882 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
HMGB1P49-201ENST00000418882 PROM2Q8N271 834 aa14.04□□□□□ -0.16
HMGB1P49-201ENST00000418882 AKT1S1Q96B36 256 aa14□□□□□ -0.17
HMGB1P49-201ENST00000418882 PABPN1Q86U42 306 aaKnown RBP eCLIP13.99□□□□□ -0.17
HMGB1P49-201ENST00000418882 REM2Q8IYK8 340 aaPredicted RBP13.93□□□□□ -0.18
HMGB1P49-201ENST00000418882 PITPNM1O00562 1244 aa13.8□□□□□ -0.2
HMGB1P49-201ENST00000418882 SPDYE1Q8NFV5 336 aaPredicted RBP13.75□□□□□ -0.21
HMGB1P49-201ENST00000418882 CLEC11AQ9Y240 323 aa13.72□□□□□ -0.21
HMGB1P49-201ENST00000418882 STAG3Q9UJ98 1225 aa13.64□□□□□ -0.23
HMGB1P49-201ENST00000418882 CHRDL2Q6WN34 429 aa13.63□□□□□ -0.23
HMGB1P49-201ENST00000418882 FBXO3Q9UK99 471 aa13.62□□□□□ -0.23
HMGB1P49-201ENST00000418882 PRR29P0C7W0 189 aa13.57□□□□□ -0.24
HMGB1P49-201ENST00000418882 VASPP50552 380 aaPredicted RBP13.55□□□□□ -0.24
HMGB1P49-201ENST00000418882 FXR2P51116 673 aaKnown RBP eCLIP13.52□□□□□ -0.25
HMGB1P49-201ENST00000418882 PIP4P2Q8N4L2 257 aa13.5□□□□□ -0.25
HMGB1P49-201ENST00000418882 CREBZFQ9NS37 354 aa13.5□□□□□ -0.25
HMGB1P49-201ENST00000418882 CHADLQ6NUI6 762 aa13.48□□□□□ -0.25
HMGB1P49-201ENST00000418882 MIER1Q8N108 512 aa13.44□□□□□ -0.26
HMGB1P49-201ENST00000418882 IFNLR1Q8IU57 520 aaPredicted RBP13.42□□□□□ -0.26
HMGB1P49-201ENST00000418882 PRKAR2AP13861 404 aaKnown RBP13.41□□□□□ -0.26
HMGB1P49-201ENST00000418882 PLCD3Q8N3E9 789 aa13.41□□□□□ -0.26
HMGB1P49-201ENST00000418882 MNX1P50219 401 aaPredicted RBP13.4□□□□□ -0.26
HMGB1P49-201ENST00000418882 FARP1Q9Y4F1 1045 aaPredicted RBP13.28□□□□□ -0.28
HMGB1P49-201ENST00000418882 KLHL34Q8N239 644 aa13.25□□□□□ -0.29
HMGB1P49-201ENST00000418882 PLEKHG5O94827 1062 aa13.24□□□□□ -0.29
HMGB1P49-201ENST00000418882 POTEHQ6S545 545 aa13.2□□□□□ -0.3
HMGB1P49-201ENST00000418882 NUBP1P53384 320 aa13.19□□□□□ -0.3
HMGB1P49-201ENST00000418882 ZBTB47Q9UFB7 747 aaPredicted RBP13.18□□□□□ -0.3
HMGB1P49-201ENST00000418882 SPOCK2Q92563 424 aa13.17□□□□□ -0.3
HMGB1P49-201ENST00000418882 RASEFQ8IZ41 740 aa13.15□□□□□ -0.3
HMGB1P49-201ENST00000418882 NPM1P06748 294 aaKnown RBP eCLIP13.12□□□□□ -0.31
HMGB1P49-201ENST00000418882 C19orf67A6NJJ6 358 aa13.06□□□□□ -0.32
HMGB1P49-201ENST00000418882 EVX2Q03828 476 aa13.04□□□□□ -0.32
HMGB1P49-201ENST00000418882 RTN4Q9NQC3 1192 aaKnown RBP13.03□□□□□ -0.32
HMGB1P49-201ENST00000418882 TSPYL2Q9H2G4 693 aaPredicted RBP13.02□□□□□ -0.33
HMGB1P49-201ENST00000418882 CD44P16070 742 aaKnown RBP13.01□□□□□ -0.33
HMGB1P49-201ENST00000418882 HAX1O00165 279 aa12.99□□□□□ -0.33
HMGB1P49-201ENST00000418882 PKD2Q13563 968 aa12.99□□□□□ -0.33
HMGB1P49-201ENST00000418882 DCAF8Q5TAQ9 597 aa12.97□□□□□ -0.33
HMGB1P49-201ENST00000418882 FAM212AQ96EL1 285 aa12.97□□□□□ -0.33
HMGB1P49-201ENST00000418882 CIZ1Q9ULV3 898 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 167.5 ms