Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MIR199B-201ENST00000384849 110 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.46□□□□□ -1.37
COL5A1P20908 AL139805.1-201ENST00000407837 289 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 RN7SKP108-201ENST00000411367 328 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.46□□□□□ -1.37
COL5A1P20908 DHFRP2-201ENST00000414224 547 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.46□□□□□ -1.37
COL5A1P20908 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A1P20908 OR52I1-201ENST00000450052 1050 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 AC026826.1-201ENST00000493002 361 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.46□□□□□ -1.37
COL5A1P20908 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.46□□□□□ -1.37
COL5A1P20908 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC6.46□□□□□ -1.37
COL5A1P20908 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A1P20908 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.46□□□□□ -1.37
COL5A1P20908 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL5A1P20908 AC018692.2-201ENST00000624130 348 ntBASIC6.46□□□□□ -1.37
COL5A1P20908 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC6.46□□□□□ -1.37
COL5A1P20908 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A1P20908 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A1P20908 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A1P20908 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 BX322650.1-201ENST00000332359 2143 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 MIR937-201ENST00000401271 86 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A1P20908 CHEK2P5-201ENST00000423877 246 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 OSTCP4-201ENST00000424397 449 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC6.46□□□□□ -1.38
COL5A1P20908 PAICSP2-201ENST00000429118 1150 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A1P20908 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.46□□□□□ -1.38
COL5A1P20908 COX6B1P2-201ENST00000489624 230 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.46□□□□□ -1.38
COL5A1P20908 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC6.46□□□□□ -1.38
COL5A1P20908 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.46□□□□□ -1.38
COL5A1P20908 GLYATL1P2-202ENST00000588046 902 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A1P20908 SNORD91A-202ENST00000609620 191 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 AC109309.2-201ENST00000612597 332 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.46□□□□□ -1.38
COL5A1P20908 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.46□□□□□ -1.38
COL5A1P20908 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.46□□□□□ -1.38
COL5A1P20908 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
COL5A1P20908 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A1P20908 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A1P20908 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC6.45□□□□□ -1.38
COL5A1P20908 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
COL5A1P20908 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 LRRC37A15P-201ENST00000514785 1355 ntBASIC6.45□□□□□ -1.38
COL5A1P20908 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
COL5A1P20908 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 NLRP3-203ENST00000366496 3996 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC6.45□□□□□ -1.38
COL5A1P20908 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
COL5A1P20908 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.45□□□□□ -1.38
COL5A1P20908 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL5A1P20908 NRIR-201ENST00000366140 799 ntTSL 3 BASIC6.45□□□□□ -1.38
COL5A1P20908 GCNT1P4-201ENST00000404096 329 ntBASIC6.45□□□□□ -1.38
COL5A1P20908 SNORA77.2-201ENST00000408571 112 ntBASIC6.45□□□□□ -1.38
COL5A1P20908 RN7SKP296-201ENST00000411185 341 ntBASIC6.45□□□□□ -1.38
COL5A1P20908 RPL12P12-201ENST00000424633 501 ntBASIC6.45□□□□□ -1.38
COL5A1P20908 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC6.45□□□□□ -1.38
COL5A1P20908 AC124945.1-201ENST00000485133 188 ntBASIC6.45□□□□□ -1.38
COL5A1P20908 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.45□□□□□ -1.38
COL5A1P20908 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.45□□□□□ -1.38
COL5A1P20908 AC011352.2-201ENST00000514574 1016 ntBASIC6.45□□□□□ -1.38
COL5A1P20908 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms