Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
TRAIPQ9BWF2 B3GALT5-202ENST00000380618 2763 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 ZNF655-213ENST00000425063 4624 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 TNS4-201ENST00000254051 4067 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 GABRP-201ENST00000265294 3310 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC016251.1-201ENST00000624299 4198 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 ZNF20-201ENST00000334213 3061 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC104083.1-201ENST00000569449 2615 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 PTPRD-204ENST00000397606 5038 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 PTPRD-211ENST00000486161 5039 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 DGKB-205ENST00000406247 3257 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 FMO9P-202ENST00000488458 1535 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 GLS2-215ENST00000539272 2174 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 RNU6-224P-201ENST00000384055 107 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC017104.2-201ENST00000417000 321 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AL354732.1-204ENST00000421020 755 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC010099.3-201ENST00000423896 409 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 LINC01811-202ENST00000424786 787 ntTSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 RPL23AP4-201ENST00000427757 463 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AL589990.1-201ENST00000432210 592 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 PHBP4-201ENST00000437447 837 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC016396.1-201ENST00000440189 328 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 RPL7P17-201ENST00000470927 724 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 LINC00960-202ENST00000492922 2126 ntTSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AP003385.2-201ENST00000524910 973 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AP000619.1-201ENST00000540293 1000 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 NUTF2P2-201ENST00000551207 384 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC009063.2-201ENST00000563981 906 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 MT1L-202ENST00000566367 78 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC137056.1-202ENST00000575772 753 ntTSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC005884.1-201ENST00000588604 429 ntTSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AP001120.4-201ENST00000590231 108 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 GAS5-AS1-201ENST00000602767 694 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AL021807.1-201ENST00000607175 565 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 OR6L2P-201ENST00000608207 925 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 CT45A10-201ENST00000611668 1010 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC018558.4-201ENST00000622153 281 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC120349.3-201ENST00000624377 529 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 GMFB-210ENST00000628554 639 ntTSL 4 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 NR1I3-235ENST00000628566 1201 ntTSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC119674.1-212ENST00000641155 993 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 TDGF1P3-202ENST00000602699 2710 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 PDE4D-208ENST00000502484 2478 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 CCDC39-201ENST00000442201 3279 ntAPPRIS P1 TSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 ABCA17P-204ENST00000494925 3478 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 UGT2B26P-201ENST00000508672 1613 ntBASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 PTPDC1-204ENST00000620992 4437 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 SLC37A3-202ENST00000340308 2955 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 RRN3-203ENST00000429751 2198 ntTSL 2 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
TRAIPQ9BWF2 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 ZNF708-201ENST00000356929 4004 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 NAA40-202ENST00000377793 3664 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 BTN2A1-201ENST00000312541 2920 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.03
TRAIPQ9BWF2 AC087501.5-201ENST00000607496 2374 ntBASIC8.6□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms