Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 AL589743.5-201ENST00000616611 1050 ntBASIC17.79■□□□□ 0.44
VSX1Q9NZR4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.79■□□□□ 0.44
VSX1Q9NZR4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VSX1Q9NZR4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 KRT8P20-201ENST00000423953 1409 ntBASIC17.78■□□□□ 0.44
VSX1Q9NZR4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VSX1Q9NZR4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.77■□□□□ 0.44
VSX1Q9NZR4 AC005181.1-201ENST00000604782 1256 ntBASIC17.77■□□□□ 0.44
VSX1Q9NZR4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VSX1Q9NZR4 KRT16P6-202ENST00000425692 1426 ntBASIC17.77■□□□□ 0.44
VSX1Q9NZR4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VSX1Q9NZR4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VSX1Q9NZR4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.77■□□□□ 0.43
VSX1Q9NZR4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.77■□□□□ 0.43
VSX1Q9NZR4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 AC009237.14-201ENST00000609975 1594 ntBASIC17.76■□□□□ 0.43
VSX1Q9NZR4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VSX1Q9NZR4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 AC004911.1-201ENST00000416316 871 ntBASIC17.75■□□□□ 0.43
VSX1Q9NZR4 AC093787.1-201ENST00000450396 207 ntBASIC17.75■□□□□ 0.43
VSX1Q9NZR4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 C2orf69P4-201ENST00000565394 541 ntBASIC17.75■□□□□ 0.43
VSX1Q9NZR4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 AC092437.1-201ENST00000624794 1048 ntBASIC17.75■□□□□ 0.43
VSX1Q9NZR4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.75■□□□□ 0.43
VSX1Q9NZR4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms