Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
SMARCAL1Q9NZC9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.95■□□□□ 0.94
SMARCAL1Q9NZC9 Z82202.1-201ENST00000623446 1880 ntBASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 AC243732.1-201ENST00000612648 864 ntBASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 AC004854.2-201ENST00000608450 1441 ntBASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCAL1Q9NZC9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 AC097381.1-201ENST00000429019 1296 ntBASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 FAM21FP-204ENST00000608637 956 ntBASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCAL1Q9NZC9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 MIR6821-201ENST00000617625 74 ntBASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCAL1Q9NZC9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 AC087623.3-201ENST00000607047 1098 ntBASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCAL1Q9NZC9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms