Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 NBPF21P-201ENST00000425093 1451 ntBASIC20.65■□□□□ 0.9
HPS4Q9NQG7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 KRT16P5-201ENST00000455284 522 ntBASIC20.65■□□□□ 0.9
HPS4Q9NQG7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 AF186192.3-201ENST00000583427 947 ntBASIC20.65■□□□□ 0.9
HPS4Q9NQG7 AC133561.5-201ENST00000635547 218 ntBASIC20.65■□□□□ 0.9
HPS4Q9NQG7 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS4Q9NQG7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HPS4Q9NQG7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
HPS4Q9NQG7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
HPS4Q9NQG7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 AC026310.3-201ENST00000625186 2373 ntBASIC20.64■□□□□ 0.89
HPS4Q9NQG7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS4Q9NQG7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 MIR1224-201ENST00000408193 85 ntBASIC20.63■□□□□ 0.89
HPS4Q9NQG7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 AC026471.5-201ENST00000615068 467 ntBASIC20.63■□□□□ 0.89
HPS4Q9NQG7 PTBP1P-201ENST00000554374 1601 ntBASIC20.63■□□□□ 0.89
HPS4Q9NQG7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HPS4Q9NQG7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 KRT18P21-201ENST00000515767 1272 ntBASIC20.62■□□□□ 0.89
HPS4Q9NQG7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 AC012306.2-201ENST00000609350 630 ntBASIC20.62■□□□□ 0.89
HPS4Q9NQG7 AL121906.2-201ENST00000621597 723 ntBASIC20.62■□□□□ 0.89
HPS4Q9NQG7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS4Q9NQG7 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HPS4Q9NQG7 AP003071.4-201ENST00000562276 1284 ntBASIC20.61■□□□□ 0.89
HPS4Q9NQG7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms