Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.43■■□□□ 1.02
SIX2Q9NPC8 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SIX2Q9NPC8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.42■■□□□ 1.02
SIX2Q9NPC8 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SIX2Q9NPC8 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 NCF1B-203ENST00000435988 1254 ntBASIC21.41■■□□□ 1.02
SIX2Q9NPC8 AC006970.2-201ENST00000450065 779 ntBASIC21.41■■□□□ 1.02
SIX2Q9NPC8 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.41■■□□□ 1.02
SIX2Q9NPC8 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.41■■□□□ 1.02
SIX2Q9NPC8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 PHGDH-210ENST00000641115 1638 ntBASIC21.4■■□□□ 1.02
SIX2Q9NPC8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 AP001271.2-201ENST00000624018 1556 ntBASIC21.4■■□□□ 1.02
SIX2Q9NPC8 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
SIX2Q9NPC8 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.39■■□□□ 1.02
SIX2Q9NPC8 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
SIX2Q9NPC8 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
SIX2Q9NPC8 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
SIX2Q9NPC8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
SIX2Q9NPC8 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.39■■□□□ 1.02
SIX2Q9NPC8 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 TSPY6P-201ENST00000448518 926 ntBASIC21.39■■□□□ 1.01
SIX2Q9NPC8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SIX2Q9NPC8 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 DUSP5P2-201ENST00000426873 1033 ntBASIC21.38■■□□□ 1.01
SIX2Q9NPC8 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.38■■□□□ 1.01
SIX2Q9NPC8 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms