Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 TERC-201ENST00000602385 541 ntBASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL25A1Q9BXS0 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL25A1Q9BXS0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL25A1Q9BXS0 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 KRT18P31-201ENST00000506277 1292 ntBASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
COL25A1Q9BXS0 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 AC008040.2-201ENST00000461049 708 ntBASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 AC011298.2-201ENST00000617989 482 ntBASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
COL25A1Q9BXS0 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 HLA-G-202ENST00000376815 851 ntBASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 AP001160.2-201ENST00000596071 487 ntBASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.37■□□□□ 0.85
COL25A1Q9BXS0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 FOSL1P1-201ENST00000511041 816 ntBASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 AC012615.1-201ENST00000565797 1299 ntBASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.36■□□□□ 0.85
COL25A1Q9BXS0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 SPDYE15P-201ENST00000424157 909 ntBASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 KRT16P4-201ENST00000453883 522 ntBASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.35■□□□□ 0.85
COL25A1Q9BXS0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms