Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.28■□□□□ 0.52
TIMP4Q99727 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.28■□□□□ 0.52
TIMP4Q99727 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TIMP4Q99727 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TIMP4Q99727 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
TIMP4Q99727 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TIMP4Q99727 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TIMP4Q99727 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.28■□□□□ 0.52
TIMP4Q99727 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.28■□□□□ 0.52
TIMP4Q99727 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.28■□□□□ 0.52
TIMP4Q99727 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TIMP4Q99727 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.27■□□□□ 0.52
TIMP4Q99727 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.27■□□□□ 0.52
TIMP4Q99727 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TIMP4Q99727 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.27■□□□□ 0.52
TIMP4Q99727 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.27■□□□□ 0.52
TIMP4Q99727 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.27■□□□□ 0.52
TIMP4Q99727 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.27■□□□□ 0.52
TIMP4Q99727 AC073648.6-201ENST00000641589 218 ntBASIC18.27■□□□□ 0.52
TIMP4Q99727 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TIMP4Q99727 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.27■□□□□ 0.52
TIMP4Q99727 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
TIMP4Q99727 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TIMP4Q99727 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TIMP4Q99727 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
TIMP4Q99727 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.27■□□□□ 0.51
TIMP4Q99727 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
TIMP4Q99727 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TIMP4Q99727 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
TIMP4Q99727 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.26■□□□□ 0.51
TIMP4Q99727 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.26■□□□□ 0.51
TIMP4Q99727 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
TIMP4Q99727 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
TIMP4Q99727 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
TIMP4Q99727 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.26■□□□□ 0.51
TIMP4Q99727 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.26■□□□□ 0.51
TIMP4Q99727 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.26■□□□□ 0.51
TIMP4Q99727 SOX15-203ENST00000570788 1093 ntBASIC18.26■□□□□ 0.51
TIMP4Q99727 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
TIMP4Q99727 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.26■□□□□ 0.51
TIMP4Q99727 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.26■□□□□ 0.51
TIMP4Q99727 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TIMP4Q99727 TCF3P1-201ENST00000423021 1937 ntBASIC18.25■□□□□ 0.51
TIMP4Q99727 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.25■□□□□ 0.51
TIMP4Q99727 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
TIMP4Q99727 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.25■□□□□ 0.51
TIMP4Q99727 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.25■□□□□ 0.51
TIMP4Q99727 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.25■□□□□ 0.51
TIMP4Q99727 AC098590.1-201ENST00000468126 897 ntBASIC18.25■□□□□ 0.51
TIMP4Q99727 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.25■□□□□ 0.51
TIMP4Q99727 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.25■□□□□ 0.51
TIMP4Q99727 MIR2861-201ENST00000636310 90 ntBASIC18.25■□□□□ 0.51
TIMP4Q99727 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TIMP4Q99727 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.25■□□□□ 0.51
TIMP4Q99727 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TIMP4Q99727 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
TIMP4Q99727 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TIMP4Q99727 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.24■□□□□ 0.51
TIMP4Q99727 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.24■□□□□ 0.51
TIMP4Q99727 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms