Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC23.77■■□□□ 1.4
SMC1BQ8NDV3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 AC007663.1-201ENST00000438948 1240 ntBASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 AP000692.2-201ENST00000608391 879 ntBASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 AC008622.2-201ENST00000617006 1229 ntBASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC23.76■■□□□ 1.39
SMC1BQ8NDV3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 FXN-203ENST00000396366 922 ntTSL 2 BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 AC004980.1-204ENST00000429707 299 ntBASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 PRSS44-201ENST00000515154 1146 ntBASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 AL512604.3-201ENST00000569583 964 ntBASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 MIR3652-201ENST00000579335 131 ntBASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SMC1BQ8NDV3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.74■■□□□ 1.39
SMC1BQ8NDV3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 CKBP1-201ENST00000565489 1086 ntBASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 AL441883.1-201ENST00000566170 1045 ntBASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 BCL10-202ENST00000620248 774 ntTSL 5 BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 AC131212.4-201ENST00000623606 975 ntBASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SMC1BQ8NDV3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC1BQ8NDV3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC1BQ8NDV3 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms