Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.92■□□□□ 0.14
CLRN3Q8NCR9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CLRN3Q8NCR9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 AC003102.1-202ENST00000563394 1796 ntBASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 AC067852.2-201ENST00000590513 2313 ntBASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 GAK-223ENST00000628912 497 ntTSL 5 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN3Q8NCR9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.89■□□□□ 0.14
CLRN3Q8NCR9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 AC092720.2-201ENST00000602388 1665 ntBASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 TREX1-205ENST00000625293 1783 ntBASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN3Q8NCR9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms