Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
USHBP1Q8N6Y0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 AC005521.1-201ENST00000393351 872 ntBASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 KRT18P57-201ENST00000443599 1254 ntBASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 KRT18P35-201ENST00000510488 1269 ntBASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC26.39■■□□□ 1.82
USHBP1Q8N6Y0 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
USHBP1Q8N6Y0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 AC026310.3-201ENST00000625186 2373 ntBASIC26.38■■□□□ 1.81
USHBP1Q8N6Y0 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 KSR1P1-201ENST00000446298 240 ntBASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 AC116562.2-201ENST00000507042 360 ntBASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 DUT-205ENST00000558813 769 ntTSL 2 BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 P4HB-223ENST00000576390 439 ntTSL 4 BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 AC010947.1-201ENST00000623454 693 ntBASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 KRT16P1-201ENST00000399124 1418 ntBASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USHBP1Q8N6Y0 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
USHBP1Q8N6Y0 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 LINC01568-207ENST00000641790 1380 ntBASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 LINC00565-201ENST00000562710 2331 ntBASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 AC005363.2-201ENST00000618631 242 ntBASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
USHBP1Q8N6Y0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 AC006128.1-201ENST00000624704 1661 ntBASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC26.34■■□□□ 1.81
USHBP1Q8N6Y0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 MESTP1-201ENST00000404287 994 ntBASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 FITM1-202ENST00000559294 800 ntBASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 ABBA01031674.1-201ENST00000635145 728 ntBASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 AC092865.7-201ENST00000641832 219 ntBASIC26.33■■□□□ 1.81
USHBP1Q8N6Y0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms