Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS52Q8N1B4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
VPS52Q8N1B4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 TSPY15P-201ENST00000457163 923 ntBASIC21.58■■□□□ 1.05
VPS52Q8N1B4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.58■■□□□ 1.05
VPS52Q8N1B4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS52Q8N1B4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 MIR1224-201ENST00000408193 85 ntBASIC21.57■■□□□ 1.04
VPS52Q8N1B4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
VPS52Q8N1B4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
VPS52Q8N1B4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS52Q8N1B4 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS52Q8N1B4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS52Q8N1B4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.55■■□□□ 1.04
VPS52Q8N1B4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS52Q8N1B4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS52Q8N1B4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS52Q8N1B4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms