Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28AQ8IWP9 AIRN-201ENST00000601203 4374 ntBASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28AQ8IWP9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 AC103834.1-201ENST00000520383 144 ntBASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 AC103724.3-201ENST00000564481 992 ntBASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 Z82202.1-201ENST00000623446 1880 ntBASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC28AQ8IWP9 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 AC009086.3-201ENST00000623486 1008 ntBASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CCDC28AQ8IWP9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CCDC28AQ8IWP9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms