Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.14■□□□□ 0.66
TRIM40Q6P9F5 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 AL355802.2-201ENST00000402069 882 ntBASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 AC097658.1-201ENST00000475555 843 ntBASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 AC133041.1-202ENST00000642053 222 ntBASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM40Q6P9F5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 AC142086.2-201ENST00000569753 217 ntBASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.13■□□□□ 0.65
TRIM40Q6P9F5 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 AC073210.2-201ENST00000430369 194 ntBASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 AC069152.1-201ENST00000438030 544 ntBASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 AC112907.3-201ENST00000577781 2400 ntBASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM40Q6P9F5 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 PTBP1P-201ENST00000554374 1601 ntBASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 AL031963.3-201ENST00000606441 850 ntBASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM40Q6P9F5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 KRT8P20-201ENST00000423953 1409 ntBASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 HLA-G-202ENST00000376815 851 ntBASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 HLA-G-203ENST00000376818 1127 ntBASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 AC023632.3-201ENST00000521633 145 ntBASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 AC098934.4-201ENST00000564127 592 ntBASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM40Q6P9F5 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms