Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT39Q6A163 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.56■■□□□ 1.04
KRT39Q6A163 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT39Q6A163 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT39Q6A163 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT39Q6A163 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT39Q6A163 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
KRT39Q6A163 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
KRT39Q6A163 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT39Q6A163 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT39Q6A163 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT39Q6A163 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.54■■□□□ 1.04
KRT39Q6A163 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT39Q6A163 SLC25A24-204ENST00000569674 2357 ntBASIC21.54■■□□□ 1.04
KRT39Q6A163 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT39Q6A163 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.54■■□□□ 1.04
KRT39Q6A163 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT39Q6A163 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT39Q6A163 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT39Q6A163 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
KRT39Q6A163 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
KRT39Q6A163 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
KRT39Q6A163 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.53■■□□□ 1.04
KRT39Q6A163 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.53■■□□□ 1.04
KRT39Q6A163 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.53■■□□□ 1.04
KRT39Q6A163 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT39Q6A163 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT39Q6A163 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.53■■□□□ 1.04
KRT39Q6A163 AC060766.5-201ENST00000590539 871 ntBASIC21.53■■□□□ 1.04
KRT39Q6A163 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.53■■□□□ 1.04
KRT39Q6A163 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT39Q6A163 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT39Q6A163 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
KRT39Q6A163 AC092368.3-202ENST00000574180 1591 ntBASIC21.53■■□□□ 1.04
KRT39Q6A163 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.53■■□□□ 1.04
KRT39Q6A163 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT39Q6A163 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT39Q6A163 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT39Q6A163 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
KRT39Q6A163 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT39Q6A163 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
KRT39Q6A163 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.52■■□□□ 1.04
KRT39Q6A163 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
KRT39Q6A163 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.52■■□□□ 1.04
KRT39Q6A163 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT39Q6A163 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT39Q6A163 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
KRT39Q6A163 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT39Q6A163 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT39Q6A163 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT39Q6A163 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT39Q6A163 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT39Q6A163 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT39Q6A163 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT39Q6A163 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.51■■□□□ 1.03
KRT39Q6A163 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.51■■□□□ 1.03
KRT39Q6A163 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.51■■□□□ 1.03
KRT39Q6A163 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.51■■□□□ 1.03
KRT39Q6A163 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.51■■□□□ 1.03
KRT39Q6A163 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
KRT39Q6A163 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
KRT39Q6A163 TMEM179-206ENST00000616017 1645 ntBASIC21.51■■□□□ 1.03
KRT39Q6A163 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT39Q6A163 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
KRT39Q6A163 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT39Q6A163 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.5■■□□□ 1.03
KRT39Q6A163 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
KRT39Q6A163 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms