Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CHD9Q3L8U1 HMGA1P5-201ENST00000412453 271 ntBASIC21.3■■□□□ 1
CHD9Q3L8U1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.3■■□□□ 1
CHD9Q3L8U1 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.3■■□□□ 1
CHD9Q3L8U1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.29■■□□□ 1
CHD9Q3L8U1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CHD9Q3L8U1 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CHD9Q3L8U1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.29■■□□□ 1
CHD9Q3L8U1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.29■■□□□ 1
CHD9Q3L8U1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.29■■□□□ 1
CHD9Q3L8U1 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CHD9Q3L8U1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CHD9Q3L8U1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.29■■□□□ 1
CHD9Q3L8U1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.29■■□□□ 1
CHD9Q3L8U1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.29■■□□□ 1
CHD9Q3L8U1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.29■■□□□ 1
CHD9Q3L8U1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.29■■□□□ 1
CHD9Q3L8U1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.29■■□□□ 1
CHD9Q3L8U1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.29■■□□□ 1
CHD9Q3L8U1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.28■■□□□ 1
CHD9Q3L8U1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.28■■□□□ 1
CHD9Q3L8U1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CHD9Q3L8U1 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.28■■□□□ 1
CHD9Q3L8U1 C1QL1P1-201ENST00000568105 661 ntBASIC21.28■■□□□ 1
CHD9Q3L8U1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
CHD9Q3L8U1 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CHD9Q3L8U1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.28■■□□□ 1
CHD9Q3L8U1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.28■■□□□ 1
CHD9Q3L8U1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.28■■□□□ 1
CHD9Q3L8U1 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CHD9Q3L8U1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CHD9Q3L8U1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
CHD9Q3L8U1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.27■■□□□ 1
CHD9Q3L8U1 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CHD9Q3L8U1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.27■■□□□ 1
CHD9Q3L8U1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.27■■□□□ 1
CHD9Q3L8U1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CHD9Q3L8U1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.27■□□□□ 0.99
CHD9Q3L8U1 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 AL121603.2-201ENST00000557373 2117 ntBASIC21.26■□□□□ 0.99
CHD9Q3L8U1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.26■□□□□ 0.99
CHD9Q3L8U1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CHD9Q3L8U1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 AC246785.2-201ENST00000432512 513 ntBASIC21.25■□□□□ 0.99
CHD9Q3L8U1 AC092647.4-201ENST00000457211 535 ntBASIC21.25■□□□□ 0.99
CHD9Q3L8U1 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.25■□□□□ 0.99
CHD9Q3L8U1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.24■□□□□ 0.99
CHD9Q3L8U1 PCED1CP-201ENST00000419887 785 ntBASIC21.24■□□□□ 0.99
CHD9Q3L8U1 PVRIG2P-201ENST00000435460 978 ntBASIC21.24■□□□□ 0.99
CHD9Q3L8U1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms