Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CLTCL1P53675 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CLTCL1P53675 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC28.72■■■□□ 2.19
CLTCL1P53675 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
CLTCL1P53675 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC28.72■■■□□ 2.19
CLTCL1P53675 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC28.72■■■□□ 2.19
CLTCL1P53675 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
CLTCL1P53675 AC010947.1-201ENST00000623454 693 ntBASIC28.72■■■□□ 2.19
CLTCL1P53675 CR392000.1-201ENST00000624770 1228 ntBASIC28.72■■■□□ 2.19
CLTCL1P53675 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
CLTCL1P53675 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
CLTCL1P53675 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CLTCL1P53675 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC28.72■■■□□ 2.19
CLTCL1P53675 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC28.72■■■□□ 2.19
CLTCL1P53675 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
CLTCL1P53675 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
CLTCL1P53675 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC28.71■■■□□ 2.19
CLTCL1P53675 TFP1-202ENST00000475455 1573 ntBASIC28.71■■■□□ 2.19
CLTCL1P53675 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC28.71■■■□□ 2.19
CLTCL1P53675 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC28.71■■■□□ 2.19
CLTCL1P53675 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC28.71■■■□□ 2.19
CLTCL1P53675 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CLTCL1P53675 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CLTCL1P53675 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC28.71■■■□□ 2.19
CLTCL1P53675 AC018553.1-201ENST00000616682 1458 ntBASIC28.7■■■□□ 2.19
CLTCL1P53675 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CLTCL1P53675 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
CLTCL1P53675 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC28.7■■■□□ 2.19
CLTCL1P53675 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CLTCL1P53675 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CLTCL1P53675 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
CLTCL1P53675 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC28.7■■■□□ 2.19
CLTCL1P53675 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC28.7■■■□□ 2.19
CLTCL1P53675 FITM1-202ENST00000559294 800 ntBASIC28.7■■■□□ 2.19
CLTCL1P53675 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC28.7■■■□□ 2.19
CLTCL1P53675 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.19
CLTCL1P53675 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC28.7■■■□□ 2.19
CLTCL1P53675 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
CLTCL1P53675 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CLTCL1P53675 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC28.69■■■□□ 2.18
CLTCL1P53675 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC28.69■■■□□ 2.18
CLTCL1P53675 KRT18P16-201ENST00000510337 1294 ntBASIC28.69■■■□□ 2.18
CLTCL1P53675 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
CLTCL1P53675 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
CLTCL1P53675 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC28.69■■■□□ 2.18
CLTCL1P53675 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC28.69■■■□□ 2.18
CLTCL1P53675 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC28.69■■■□□ 2.18
CLTCL1P53675 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
CLTCL1P53675 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
CLTCL1P53675 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CLTCL1P53675 AL445675.2-201ENST00000620291 557 ntBASIC28.69■■■□□ 2.18
CLTCL1P53675 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC28.69■■■□□ 2.18
CLTCL1P53675 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CLTCL1P53675 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
CLTCL1P53675 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC28.68■■■□□ 2.18
CLTCL1P53675 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CLTCL1P53675 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CLTCL1P53675 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC28.68■■■□□ 2.18
CLTCL1P53675 KRT18P57-201ENST00000443599 1254 ntBASIC28.68■■■□□ 2.18
CLTCL1P53675 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC28.68■■■□□ 2.18
CLTCL1P53675 LINC00565-201ENST00000562710 2331 ntBASIC28.68■■■□□ 2.18
CLTCL1P53675 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC28.68■■■□□ 2.18
CLTCL1P53675 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC28.67■■■□□ 2.18
CLTCL1P53675 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC28.67■■■□□ 2.18
CLTCL1P53675 AP006587.1-201ENST00000534129 1502 ntBASIC28.67■■■□□ 2.18
CLTCL1P53675 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CLTCL1P53675 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CLTCL1P53675 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
CLTCL1P53675 AC079834.2-201ENST00000609776 1949 ntBASIC28.67■■■□□ 2.18
CLTCL1P53675 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CLTCL1P53675 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CLTCL1P53675 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC28.67■■■□□ 2.18
CLTCL1P53675 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CLTCL1P53675 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CLTCL1P53675 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
CLTCL1P53675 PPP1R14BP5-201ENST00000440334 435 ntBASIC28.67■■■□□ 2.18
CLTCL1P53675 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC28.67■■■□□ 2.18
CLTCL1P53675 AC092865.7-201ENST00000641832 219 ntBASIC28.67■■■□□ 2.18
CLTCL1P53675 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
CLTCL1P53675 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC28.67■■■□□ 2.18
CLTCL1P53675 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC28.67■■■□□ 2.18
CLTCL1P53675 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
CLTCL1P53675 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CLTCL1P53675 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CLTCL1P53675 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CLTCL1P53675 TERF1P1-201ENST00000311003 1181 ntBASIC28.66■■■□□ 2.18
CLTCL1P53675 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CLTCL1P53675 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC28.66■■■□□ 2.18
CLTCL1P53675 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CLTCL1P53675 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms