Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.24■□□□□ 0.51
RFC3P40938 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RFC3P40938 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.24■□□□□ 0.51
RFC3P40938 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.24■□□□□ 0.51
RFC3P40938 AC023632.3-201ENST00000521633 145 ntBASIC18.24■□□□□ 0.51
RFC3P40938 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.24■□□□□ 0.51
RFC3P40938 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.24■□□□□ 0.51
RFC3P40938 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.24■□□□□ 0.51
RFC3P40938 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.24■□□□□ 0.51
RFC3P40938 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.24■□□□□ 0.51
RFC3P40938 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.24■□□□□ 0.51
RFC3P40938 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RFC3P40938 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RFC3P40938 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.23■□□□□ 0.51
RFC3P40938 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.23■□□□□ 0.51
RFC3P40938 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFC3P40938 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.23■□□□□ 0.51
RFC3P40938 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC3P40938 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 PRKY-204ENST00000533551 1019 ntBASIC18.22■□□□□ 0.51
RFC3P40938 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.22■□□□□ 0.51
RFC3P40938 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.22■□□□□ 0.51
RFC3P40938 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.22■□□□□ 0.51
RFC3P40938 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.22■□□□□ 0.51
RFC3P40938 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.22■□□□□ 0.51
RFC3P40938 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RFC3P40938 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.21■□□□□ 0.51
RFC3P40938 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 PTBP1P-201ENST00000554374 1601 ntBASIC18.21■□□□□ 0.51
RFC3P40938 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.21■□□□□ 0.51
RFC3P40938 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
RFC3P40938 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.21■□□□□ 0.51
RFC3P40938 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.21■□□□□ 0.51
RFC3P40938 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
RFC3P40938 AC110285.5-201ENST00000611501 352 ntBASIC18.21■□□□□ 0.51
RFC3P40938 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFC3P40938 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.21■□□□□ 0.51
RFC3P40938 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
RFC3P40938 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
RFC3P40938 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.21■□□□□ 0.51
RFC3P40938 AC007225.1-201ENST00000566331 1836 ntBASIC18.21■□□□□ 0.51
RFC3P40938 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
RFC3P40938 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.21■□□□□ 0.5
RFC3P40938 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
RFC3P40938 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.2■□□□□ 0.5
RFC3P40938 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms